Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9751 120 3e-22 seq10024 113 5e-20 seq12078 100 3e-16 seq12133 95.1 1e-14 seq1146 93.3 5e-14 seq241 93.3 5e-14 seq27113 91.5 2e-13 seq5692 91.5 2e-13 seq4632 91.5 2e-13 seq12207 89.7 6e-13 seq3968 89.7 6e-13 seq3763 89.7 6e-13 seq527 86.0 7e-12 seq3162 84.2 2e-11 seq11833 82.4 8e-11 seq6335 82.4 8e-11 seq2239 82.4 8e-11 >seq9751 Length=50749 Score = 120 bits (132), Expect = 3e-22 Identities = 323/485 (67%), Gaps = 8/485 (2%) Strand=Plus/Minus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| | || ||||| |||||||| || ||||| ||||| || ||| ||| Sbjct 49258 CCGGGCATTAAACCGCGCTTTTTCAACCAGAATATGGCGCAGAAACTTCCGGAGAAAAAG 49199 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATC 74927 || || ||||| || |||||||||| | || | ||||| | | | | | ||| Sbjct 49198 ATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGTTTCTCCTCCGTTGATC 49139 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGAC-CGCAGGG-ACAGTATCGATCGCTTGGA 74985 || || ||||| || || ||| || | | | || || || || || || || ||| Sbjct 49138 CATTTCATGGCCCACTCGGCCTTT--TTAGCCACACACGGCACCGTTTCAATGGCGCGGA 49081 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 |||| | ||| || |||| ||||||| | | || | | || |||| ||| Sbjct 49080 AGAGTCGGCTCTTTTCATCGGAGTCCTTGATGTAGGTCTCCAAAAGGAGACTGTACATCT 49021 Query 75046 CCGAATGAATCGACTCGTTGAACGACT-GGTACGCGTAGAAAGACCGCGCCTCTGCAATC 75104 | || || || ||| | | ||| | || | ||||||||| ||||||||| | || Sbjct 49020 CAGAGTGTATATTCTCAAT-AGCGATTTGGAAACCGTAGAAAGCCCGCGCCTCGGAGATT 48962 Query 75105 TGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCG 75164 || || || || ||| | | ||| || || | |||||| ||||| ||||||||| Sbjct 48961 TGGACCTCTTTCATAAACCGAACGGCGAGGTTTTCAAGGACGATTCCGTCGGAGGCGGCG 48902 Query 75165 AAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCC 75224 ||||| || || || |||| ||||||||||||||| | |||||| | ||||| | Sbjct 48901 AAAAAGGCAAGAACATGAGTGATGAAGTGGCGCTCATCGGCGGTGAGTGTTTCCCAGTGA 48842 Query 75225 TTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTT-TT 75283 || || | || ||| | ||||||| | ||||| |||| | ||| |||| || Sbjct 48841 CGGAGATCGGATGACAGATCGACCTCCTCGGCGGTCCA-AAACGACGCTTCGGCTTTCTT 48783 Query 75284 GTACA 75288 ||||| Sbjct 48782 GTACA 48778 >seq10024 Length=53621 Score = 113 bits (124), Expect = 5e-20 Identities = 364/556 (65%), Gaps = 8/556 (1%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| || || ||||| || || | | |||||||| | || ||||| Sbjct 14977 GCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 14918 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||||||||| ||||| ||||| ||| ||| || || || || | || ||||| Sbjct 14917 TTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAATATCCCCTCAATGCAAGCAAA 14858 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 |||| | || | ||||| | | | || | ||||| || |||||| || || Sbjct 14857 AGCGATCAACCGCTCGGCGAAAGTTTCTCCGCCGTTGATCCATTTCATAGCCCACTCGGC 14798 Query 74948 TTTTCGTTTGAC-CGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 |||| || | | |||| || || || || || || ||||||||| ||| || || Sbjct 14797 TTTT--TTAGCCACGCACGGCACCGTTTCAATGGCACGGAAGAGGCGGCTCTTTTCCTCC 14740 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065 | ||| |||| | | || | | || |||| |||| || || || || || Sbjct 14739 GAATCTTTGATGTAAGTCTCGAGAAGCAGACTGTACATCTCGGAGTGGATATTTTCAATG 14680 Query 75066 AACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATT 75124 ||| |||| | | ||||||| |||||||| | || || || || || || Sbjct 14679 -GCGATCTGGAAACCATAGAAAGCACGCGCCTCGGAGATTTGGACCTCTTTCATGAACCG 14621 Query 75125 CATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTT 75184 | | | | ||| || | |||||| || || ||||| || ||||| || || || | | Sbjct 14620 GACGGCAAGATTTTCAAGGACGATACCATCGGAGGCAGCAAAAAAGGCGAGAACGTGTGT 14561 Query 75185 GATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATC 75244 ||| ||||||||||| ||| | ||||| | ||||| | || || | |||||| Sbjct 14560 GATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTCCCAGTGTGGGAGATCGGAAGACAAATC 14501 Query 75245 AATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTT-TTGTACAAAGACCACAAGTCAG 75303 | |||||| | ||||| |||| | ||| |||| ||||||| ||| | | | Sbjct 14500 GACTTCCTCGGCAGTCCA-AAACGACGCTTCGGCTTTCTTGTACATTTCCCAAACCTGTG 14442 Query 75304 GGTAATTGATTGGAAA 75319 |||| | ||| ||||| Sbjct 14441 GGTATTGGATCGGAAA 14426 >seq12078 Length=35335 Score = 100 bits (110), Expect = 3e-16 Identities = 361/556 (65%), Gaps = 8/556 (1%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| || || || || || || | | |||||||| | || ||||| Sbjct 4591 GCCTTCATCTCGCGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATCAACCCGCGCTT 4532 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||||||||| ||||| ||||| ||| ||| ||||| || || | || ||||| Sbjct 4531 TTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAAGATCCCCTCAATGCAAGCAAA 4472 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 || | | || | ||||| | | | || | ||||| || |||||| || || Sbjct 4471 AGCTATCAACCGCTCGGCGAAAGTTTCTCCGCCGTTGATCCATTTCATAGCCCACTCGGC 4412 Query 74948 TTTTCGTTTGAC-CGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 ||| || | | |||| || || || || | || ||||||||| ||| || ||| Sbjct 4411 CTTT--TTAGCCACGCACGGTACCGTTTCAACGGCACGGAAGAGGCGACTCTTTTCCTCG 4354 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065 | ||| |||| | | || | | || |||| |||| || || || || || Sbjct 4353 GAATCTTTGATGTAAGTCTCGAGGAGCAGACTGTACATCTCGGAGTGGATATTTTCAATG 4294 Query 75066 AACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATT 75124 ||| |||| | ||||||||| |||||||| | || || || || || || Sbjct 4293 -GCGATCTGGAAACCGTAGAAAGCACGCGCCTCGGAGATTTGGACCTCTTTCATGAACCG 4235 Query 75125 CATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTT 75184 | | | | ||| || | ||| || || || ||||| || ||||| || || || | Sbjct 4234 GACGGCAAGATTTTCAAGGACAATACCATCAGAGGCTGCAAAAAAGGCGAGAACGTGAGT 4175 Query 75185 GATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATC 75244 ||| ||||||||||| ||| | ||||| | ||||| | || || | |||||| Sbjct 4174 GATGAAGTGGCGCTCGTCGGCGGTGAGAGTTTCCCAGTGACGGAGATCGGAAGACAAATC 4115 Query 75245 AATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTT-TTGTACAAAGACCACAAGTCAG 75303 || |||||| | ||||| ||| | ||| |||| ||||||| ||| | | | Sbjct 4114 AACTTCCTCGGCAGTCCA-AAAGGACGCTTCGGCTTTCTTGTACATTTCCCATACTTGTG 4056 Query 75304 GGTAATTGATTGGAAA 75319 |||| | ||| ||||| Sbjct 4055 GGTATTGGATCGGAAA 4040 >seq12133 Length=34338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 32515 ACAGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 32456 Query 79682 ATTGAGCTACGAAAGCA 79698 | ||||||||||||||| Sbjct 32455 ACTGAGCTACGAAAGCA 32439 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 33732 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33673 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 33672 TGAGCTACGAGAGCA 33658 >seq1146 Length=231740 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 27247 CTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 27306 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 27307 CTGAGCTACGAAAGCA 27322 >seq241 Length=411412 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 220734 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 220793 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 220794 TGAGCTACGAAAGCAA 220809 >seq27113 Length=1576 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1071 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1130 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 1131 TGAGCTACGAAAGCA 1145 >seq5692 Length=115088 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 44938 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAA 44997 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 44998 TGAGCTACGAAAGCA 45012 >seq4632 Length=201719 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 155166 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 155225 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 155226 TGAGCTACGAAAGCA 155240 >seq12207 Length=33994 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 19707 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19648 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 19647 TGAGCTACGAAAGC 19634 >seq3968 Length=120475 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || ||| ||||||||||||||||||||||||||| ||||| Sbjct 18995 TGCTTTCGTTGAGAGTCGAGATCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18936 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 18935 TGAGCTACGAAAGCAA 18920 >seq3763 Length=228448 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 153534 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 153475 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 153474 TGAGCTACGAAAGC 153461 >seq527 Length=308867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 80160 CTGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCAT 80219 |||||||||| |||| | |||||| |||| || ||| |||||||||||| ||||||||| Sbjct 180760 CTGCTCCCGGCGAGGCTCGAACTCGCGACCTTCGGCTCATAAGACCAACGCTCTAACCAA 180701 Query 80220 CTGAGTTACGAGAGC 80234 ||||| |||| |||| Sbjct 180700 CTGAGCTACGGGAGC 180686 >seq3162 Length=141775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 133417 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 133358 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 133357 TGAGCTATGAAAGCAA 133342 >seq11833 Length=36262 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||| | |||| |||| |||| ||||||||||||||||| ||||||||| ||||| Sbjct 21098 TGCTTTTGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAATGGGTGCTCTGACCAAC 21157 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 21158 TGAGCTACGAGAGCTAA 21174 >seq6335 Length=85198 Score = 82.4 bits (90), Expect = 8e-11 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 79628 TTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTGA 79686 |||| |||| ||||| ||| ||||||||||||||||||||||||||| ||||| ||| Sbjct 62028 TTTCATTGAGAGTTGATTTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGA 61969 Query 79687 GCTACGAAAG 79696 |||||||||| Sbjct 61968 GCTACGAAAG 61959 >seq2239 Length=168773 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 26417 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26358 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 26357 TGAGCTACGAGAGCTAA 26341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546685966582400