Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3550 187 3e-42 seq31365 181 1e-40 seq5102 176 5e-39 seq695 152 6e-32 seq3386 123 3e-23 >seq3550 Length=137586 Score = 187 bits (206), Expect = 3e-42 Identities = 234/320 (73%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 176780 TCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTA 176839 |||| ||||| ||||| || || || || |||||||| || ||||| ||||| || | | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 176840 TCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCC 176899 |||| | ||||||| |||||| || || | | | || |||||| | || || | | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 176900 CAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACG 176959 | || || | |||||||| ||||| | ||| || |||| ||| | |||||||| || | Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 176960 GTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAG 177019 ||||||| || ||||| | ||| | || | ||| || ||| ||| ||| | Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTG 92965 Query 177020 ATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 177079 |||| |||||| ||| ||| ||||||||||||||||||| || | ||| ||||| |||| Sbjct 92964 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 92905 Query 177080 TCCCACTTGACCTTGCTGCT 177099 |||| || ||||| |||||| Sbjct 92904 TCCCTCTAGACCTAGCTGCT 92885 >seq31365 Length=1132 Score = 181 bits (200), Expect = 1e-40 Identities = 233/320 (73%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 176780 TCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTA 176839 |||| ||||| ||||| || || || || |||||||| || ||||| |||| || | | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 176840 TCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCC 176899 |||| | ||||||| |||||| || || | | | || |||||| | || || | | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 176900 CAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACG 176959 | || || | |||||||| ||||| | ||| || |||| ||| | |||||||| || | Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 176960 GTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAG 177019 ||||||| || ||||| | ||| | || | ||| || ||| ||| ||| | Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-GGGCTG 234 Query 177020 ATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 177079 |||| |||||| ||| ||| ||||||||||||||||||| || | ||| ||||| |||| Sbjct 233 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 174 Query 177080 TCCCACTTGACCTTGCTGCT 177099 |||| || ||||| |||||| Sbjct 173 TCCCTCTAGACCTAGCTGCT 154 >seq5102 Length=101622 Score = 176 bits (194), Expect = 5e-39 Identities = 263/371 (71%), Gaps = 2/371 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | || ||||||||||| | ||||| || | | || || | | ||| Sbjct 52303 TTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 52245 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 52244 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 52185 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || |||||||| || || || || || | | || | || Sbjct 52184 TCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 52125 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| ||||| ||||||||||| ||| | ||||| |||||| | ||| Sbjct 52124 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCGTTGATGAATGGTTATAC 52065 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | | |||| || |||||| | | ||| | | ||||||| Sbjct 52064 AATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATG 52005 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| ||||||||| ||||||||| Sbjct 52004 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATAT 51945 Query 176506 TCTGCACCAGT 176516 || || || || Sbjct 51944 TCAGCTCCTGT 51934 >seq695 Length=285002 Score = 152 bits (168), Expect = 6e-32 Identities = 272/393 (69%), Gaps = 7/393 (2%) Strand=Plus/Minus Query 176218 TTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTA 176277 |||||||| || | | | ||||| || |||||||| ||||| | | ||||||||| Sbjct 41039 TTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATTTCTGGATCTCTA 40980 Query 176278 CTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTA 176337 || || |||||||| || || || || | | | | | || | || || | Sbjct 40979 CTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACTTCTGTAGTTATTGGTTTG 40920 Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 | ||| |||| ||||||||||| ||| | ||||| |||||| | |||||||| || || Sbjct 40919 CTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATACAATGGCGGTCCT 40861 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGG 176457 || | | |||| || |||||| | | ||| | | |||||| || || | | | Sbjct 40860 TATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCGTGAGTTG 40801 Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517 |||||||||| | ||||| |||| |||||||| | ||||||| || | || || Sbjct 40800 GAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATATTCAACTCC--TA 40743 Query 176518 TCTGCAGCGATGGCA---GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 | |||||| | | |||||| | |||||||| |||||||||| ||| |||||| Sbjct 40742 T-TGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGGGAATTTTTCTGAT 40684 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607 ||||||||| | || || || | ||| |||||| Sbjct 40683 GGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 123 bits (136), Expect = 3e-23 Identities = 386/594 (65%), Gaps = 28/594 (5%) Strand=Plus/Minus Query 176241 TATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTC 176300 ||| || |||||||| ||||| || |||||||||| || ||||||| ||| || | Sbjct 68001 TATTGATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTACGGAAACA-CATTATTTT 67943 Query 176301 AGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGC 176360 || || | | | | || || || || | || || ||||| |||| ||| | Sbjct 67942 TGGTGCCATTATTCTGACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTTAGAATC 67883 Query 176361 AGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTT 176420 || | |||||||||||| | | |||||| || | || | | |||| || ||||| Sbjct 67882 GACATCCGTTGACGAATGGTTATGCAATGGCGGTCTTTATGAGTTAATTGTTTTACACTT 67823 Query 176421 CCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCAT 176480 | | | ||| | | ||| ||||| || | || ||||| || Sbjct 67822 CTTACTTGGTGTAGCTTGTTATATGGGTCG------------TGGT------CTAGGTAT 67781 Query 176481 GCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCT 176540 ||| ||||||| ||||||||| || | || || | || || | | |||||| | Sbjct 67780 GCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTGTTTTCTT 67721 Query 176541 CGTCTATCCATTCGGTCAAGGATCTTTCT-CTGATGGTATGCCTCTTGGCATTTCAGGTA 176599 |||||||| ||| ||||||| ||| | |||||||||||| || | || || | || Sbjct 67720 AATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATCTCTGTTA 67661 Query 176600 CATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATA 176659 | ||||| || ||| |||||||||| || || |||| | || ||||||||||| || | Sbjct 67660 CTTTCAATTTCATGGTTGTATTCCAGGCTGAACACATCTTT---ATGCACCCATTTCACA 67604 Query 176660 TGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTT- 176718 || | | |||| |||| || | || || ||| | ||||| | | |||| Sbjct 67603 TGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATG--ATTCTTT 67546 Query 176719 -GTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAA 176777 || || ||| | | || | || || |||| |||| || | ||||||| Sbjct 67545 GGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGGTTACAG 67486 Query 176778 ATTCGGACAAGA-AGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTG 176830 |||| | ||||| ||| | || || || || ||||||| || ||||| |||| Sbjct 67485 ATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTG 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602909855324160