Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2335 98.7 9e-16 seq14711 95.1 1e-14 seq9733 93.3 4e-14 seq10551 91.5 1e-13 seq226 91.5 1e-13 seq7474 89.7 4e-13 seq6038 89.7 4e-13 seq11709 84.2 2e-11 seq3967 84.2 2e-11 seq1833 84.2 2e-11 seq7493 82.4 7e-11 >seq2335 Length=171082 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | |||||| || | || || ||| ||||| || || || || || Sbjct 23223 CATGCCTCCGCGAAGGCGTAAGACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTC 23164 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || ||||| |||| || |||||||| || || || || |||||||||||||||| Sbjct 23163 AGCGAGGGTTCGACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCGGG 23104 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | | || ||||| ||| ||| |||| ||| | | | |||||| || Sbjct 23103 TGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTATCGGAACTCT 23045 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || || | || || | || || || || ||||| |||||||||||||||||| Sbjct 23044 CGACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACAAAGATTTGCATCTTT 22989 >seq14711 Length=21231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | |||||||| || || ||| ||||| ||||||||||||||| Sbjct 5067 CCTCCACGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTATAATCGGCA 5008 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || ||||||||||| || ||||| || | | || ||||| | || Sbjct 5007 AGAGTTCTTCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGGTGGA 4948 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| ||||| ||| | | | | ||||| ||| || Sbjct 4947 ATTCCTTCTTTGTCCTGAATTTTGGCTTTCACATTATCAATGGTATCTGAACTCTCAACC 4888 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | ||||| || || || || |||||||||||||| Sbjct 4887 TCCAAGGTAATTGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 4841 >seq9733 Length=51005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || |||||||| || || ||| ||||| || || || ||||| | ||||| |||| Sbjct 37214 AAAACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAAGTTCGACCGTCC 37273 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 ||||| || || || || || || || | ||||||||| |||||| || || ||||| Sbjct 37274 TCAAGTTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCT-TCCTTGTC 37332 Query 39192 CATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250 |||||| |||| ||| | | | || ||| ||| || |||| ||||| Sbjct 37333 TTGGATTTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATGG 37391 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| ||||| ||||| || ||||||||||| Sbjct 37392 TTTTTCCGGTCAGGGTTTTCACGAAGATTTGCAT 37425 >seq10551 Length=45279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || |||||| || ||||||||||| |||||||| | | || || Sbjct 35249 ACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGTGTCCTCCCATCCTCC 35190 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || ||||| ||||| | ||| || || |||||| | || ||| ||||| Sbjct 35189 AACTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCAGGTGGG-ATGCCCTCCTTGTCTTG 35131 Query 39195 GATTTTCTGTTTGAGCGTCGCCA-CCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| | | | || ||||| |||||| |||| ||||| ||| Sbjct 35130 GATCTTGGCCTTGA-CATTGTCAGTAGTATCAGAACTCTCCACCTCCAAAGTGATGGTTT 35072 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || ||||| |||||||| ||||| Sbjct 35071 TTCCAGTGAGGGTTTTTACAAAGATCTGCAT 35041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| | ||| || ||||| || || || ||| ||||| || Sbjct 35508 AAATATCTGCATCCCTCCTCTAAGGCGCAAAACCAAGTGCAGAGTTGACTCCTTTTGAAT 35449 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||||||||| || | | || |||||||| || || ||||| || | | ||| Sbjct 35448 GTTATAATCGGCAAGAGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTG 35389 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | || | || ||| || ||| ||| || |||| | | | || || Sbjct 35388 CTGGTCAGGTGGTATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATTGTGTC 35329 Query 39225 ---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTG 39281 ||| |||||| |||| || || | || || |||| ||||| ||||| || || Sbjct 35328 AGAGCT---CTCCACCTCCAATGTAATGGTCTTACCGGTCAAAGTTTTCACAAAAATCTG 35272 Query 39282 CAT 39284 ||| Sbjct 35271 CAT 35269 >seq226 Length=390889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 ||||| || ||| ||||| || || || || |||||||| || | || ||||||||| Sbjct 303511 TGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGTGTACGACCATCCTCAAGCTGT 303452 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| ||||| | |||||||| ||||||| | || ||| |||||| ||| || Sbjct 303451 TTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTT 303393 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || ||| ||||| || | ||||| | || || || Sbjct 303392 GGCCTTGACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGT 303333 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| |||||||| ||||| Sbjct 303332 AAGTGTTTTTACAAAGATCTGCAT 303309 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| |||| | || ||||||||||| || || ||| |||| Sbjct 303778 ACAAAAATTTG--CATGCCACCTCGGAGACGCAACACCAAATGGAGGGTAGACTCCTTTT 303721 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || ||||| || || || || | | || ||||||||||| || ||||| || | | Sbjct 303720 GAATGTTATAGTCTGCTAGGGTCCTGCCATCTTCAAGCTGTTTCCCAGCAAAAATTAACC 303661 Query 39161 GCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 |||||||| ||||||| | || ||| |||||| || || || | | | | Sbjct 303660 TCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATT 303602 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || ||| |||||| || | ||||| | || || || || ||||| |||||||| Sbjct 303601 GTGTCGGAGCTCTCCACCTCAAGGGTGATTGTCTTGCCAGTAAGAGTTTTCACAAAGATC 303542 Query 39280 TGCAT 39284 ||||| Sbjct 303541 TGCAT 303537 >seq7474 Length=135391 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 |||||||||||||| || || || ||| ||||| |||||||| || || | ||| | Sbjct 127351 AAGCGTAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGCCAATGTCCTC 127292 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 | || |||||||| ||||| ||||| || || | |||||||| | ||| | | ||| Sbjct 127291 CCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATACCCTCC 127232 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC--TCCACGTCCACC 39243 ||||| ||| || || | ||| | | | ||| | || || || || |||| Sbjct 127231 TTGTCTTGGATCTT-TGCCTTCACGTTGTCAATCGTGT--CTGAACTTTCGACCTCCAAA 127175 Query 39244 GTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || || || || || |||||||| ||||| Sbjct 127174 GTGATGGTTTTCCCGGTAAGAGTCTTTACAAAGATCTGCAT 127134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| ||||| || |||||||||||||| |||| | | || ||| Sbjct 126886 ACCAAATGGAGAGTAGACTCCTTTTGGATGTTATAATCGGCAAGAGTTCTTCCATCTTCA 126827 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || ||||| || | | || ||||| | | | | ||||||||| Sbjct 126826 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGATGAGATTCCTTCTTTGTCCTGA 126767 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTT 39252 ||||| ||| | | | | ||||| ||| ||| || |||| || || | Sbjct 126766 ATTTTGGCTTTCACATTATCAATGGTATC---CGAACTCTCGACCTCCAAGGTAATTGTC 126710 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || |||||||||||||| Sbjct 126709 TTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 126678 >seq6038 Length=86802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/245 (69%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| | ||| || ||||||||||| || ||| || || || Sbjct 72603 AAATATCTGCATCCCTCCTCTAAGGCGCAAGACCAAATGTAGGGTTGACTCCTTCTGAAT 72544 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||| || ||||| || | |||| |||||||| || || ||||| || | | ||| Sbjct 72543 GTTATAGTCAGCAAGAGTCCTCCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTG 72484 Query 39165 CTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTAT 39223 |||||| |||||| | | ||| || ||| |||||| || | | | | || | Sbjct 72483 CTGGTCAGGTGGG-ATTCCCTCCTTATCCTGGATTTTGGCCTTAACGTTATCAATTGTGT 72425 Query 39224 C---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||| |||||| |||| || || | || || |||| ||||| ||||| || | Sbjct 72424 CAGAGCT---CTCCACCTCCAATGTAATGGTCTTACCGGTCAAGGTTTTCACAAAAATCT 72368 Query 39281 GCATC 39285 ||||| Sbjct 72367 GCATC 72363 >seq11709 Length=37133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || |||||||| | || || |||| || |||||||| || || || Sbjct 8011 CTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAA 8070 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || ||||||||||| | ||||||| | || || ||||| ||| || |||| || Sbjct 8071 GATGAGACGCTGCTGATCCGGTGGGATCCCT-TCCTTGTCTTGGATCTTGGCCTTGA-CG 8128 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | |||||| ||| || || | ||||| | ||||| ||||| || || Sbjct 8129 TTGTCGATGGTATCGGAACTCTCGACTTCAAGGGTGATTGTCTTTCCGGTCAGGGTCTTG 8188 Query 39271 ACAAAGATTTGCATCTT 39287 || |||||||||||||| Sbjct 8189 ACGAAGATTTGCATCTT 8205 >seq3967 Length=121343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || |||||||| || || ||| ||||| || || || || || | || || |||| Sbjct 66444 AAGACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCC 66385 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || |||||||| || || || || ||||| |||||||| |||||| || || ||||| Sbjct 66384 TCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGGATTCCT-TCCTTGTC 66326 Query 39192 CATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250 ||| || |||| ||| | | | || ||| ||| || |||| ||||| Sbjct 66325 TTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTG 66267 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||||| ||||| || ||||||||||| Sbjct 66266 TTTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 66233 >seq1833 Length=187927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || |||||||| | || || |||| || |||||||| || ||||| Sbjct 43745 CTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCTAGCTGTTTTCCGGCAAA 43804 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || ||||||||||||| ||||||| | || || ||||| ||| || |||| || Sbjct 43805 GATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCTTGGATCTTGGCCTTGA-CG 43862 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | |||||| ||| || || | ||||| | ||||| ||||| || || Sbjct 43863 TTGTCGATGGTATCGGAACTCTCGACTTCGAGGGTGATTGTCTTTCCGGTCAGGGTCTTG 43922 Query 39271 ACAAAGATTTGCATCTT 39287 || || || |||||||| Sbjct 43923 ACGAAAATCTGCATCTT 43939 >seq7493 Length=70190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || ||||||||||| | || | | |||| || |||||||| || || || Sbjct 10302 TCCTTTTGGATGTTATAATCGGCCAACGTCCTTCCGTCTTCCAGCTGTTTTCCGGCGAAG 10361 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||| ||||||| || | || || ||||| ||| ||| |||| ||| Sbjct 10362 ATGAGACGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTT 10420 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| ||| || || | || || | || || | || ||||| || Sbjct 10421 GTCGATGGTGTCGGATCTCTCGACCTCGAGAGTTATGGTCTTGCCGTTGAGGGTTTTCAC 10480 Query 39273 AAAGATTTGCATCTTTA 39289 |||||||||||||||| Sbjct 10481 GAAGATTTGCATCTTTA 10497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429139943578544