Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq9733 86.0 5e-12 seq10 86.0 5e-12 seq1278 84.2 2e-11 >seq9733 Length=51005 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 ||||||||| || |||||||||||||| |||| ||| | ||||||||||||||| || Sbjct 37000 AGTTGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGTTTCCC 37059 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||| | || | ||| || || ||| ||| | ||||||||||| Sbjct 37060 AGCAAAAATCAACCTCTGCTGATCTGGGGGAATCCCTTCTTTGTC 37104 >seq10 Length=577822 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || || ||||||||||| || ||||| || | ||| | ||| |||||||||||||| Sbjct 561980 GTAGACTCTTTTTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTGCCT 562039 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | ||||||||||| || || ||| | ||||| || || ||| || ||| Sbjct 562040 GCAAAGATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTCGCCTTC 562099 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATG 101219 |||| | | ||| || | || || || | ||| || |||||||| ||||||| Sbjct 562100 ACATTATCTATCGTATC--CGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTCAATG 562157 Query 101220 TTTTAATAAAAATTTGCATT 101239 | || | ||| || |||||| Sbjct 562158 TCTTCACAAAGATCTGCATT 562177 >seq1278 Length=225562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || || | ||| | ||| ||||| ||||| ||||||||||| |||| ||| | |||| Sbjct 158059 AAGACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAATCAGCCAAAGTCCTTCCATCT 158000 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||||||||||| || || | || | ||| || |||||| ||| | ||||||||||| Sbjct 157999 TCCAATTGTTTCCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATCCCTTCTTTGTC 157941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409273922485392