Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq12078 187 2e-42 seq10024 181 9e-41 seq9751 181 9e-41 >seq12078 Length=35335 Score = 187 bits (206), Expect = 2e-42 Identities = 577/880 (66%), Gaps = 12/880 (1%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| ||||| ||| |||| || ||||||||||| ||||| |||| |||||||| Sbjct 4903 TTTCTGGTACTCGCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAG 4844 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| ||||||| || || | | ||||| ||| | | || |||| | || Sbjct 4843 TTCCATCCAATCAAAAGGGTTTGCAACATTGTATATTTTCCCGTGCCCTAAAGCTCCCAG 4784 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || ||||| || || || ||||| ||||| | |||| ||| || || | ||| Sbjct 4783 CAACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCCGTTCATCCCTACTAA 4724 Query 4436 TCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | |||||| || |||| || ||||||| || || || || ||| | | || Sbjct 4723 -CGCACAGGGCAGAGCGTCGCACACAAACTCTCTCTCAATGTCAACAGCCTCTCTTACTA 4665 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATC-CAAACAATAAACACGCA 4553 | | || | |||| | || | | || | | ||| || || ||| Sbjct 4664 TCCCCTTCACGCGCTCTTCGCTCAGCTT-TGACCGGAGGAGATCGTACAGCAAGCAAGCA 4606 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||||| || || | ||||| |||| || | || | ||||| || || |||||||| || Sbjct 4605 AAATCGCAGTGGAGGCCTTCATCTC-GCGAGATTAACTCGTTTGAGAAAGTTAATCCAGG 4547 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| || || | |||||| | ||||||||| ||| || ||||| || || || || Sbjct 4546 CATCAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAAGATCCC 4487 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 || | | ||||| |||| || || |||| | | || | | || ||||| Sbjct 4486 CTCAATGCAAGCAAAAGCTATCAACCGCTCGGCGAAAG---TTTCTCCGCCGTTGATCCA 4430 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||| | ||||| | || ||||| |||||||| | || | | || || | Sbjct 4429 TTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAACGGCACGGAAGAG 4370 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 ||| ||||| | |||| || ||||| || | || || || ||||| || || Sbjct 4369 GCGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGAGGAGCAGACTGTACATCTCGGA 4310 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAA 4911 || |||||||| || || ||||| || ||||| |||||| | || || | | ||| | Sbjct 4309 GTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCGGAGATTTGGA 4251 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 | || || || | | | | ||||| || ||||| ||| ||||||||||| Sbjct 4250 CCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCATCAGAGGCTGCAAAAA 4191 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || | ||| |||| || |||| | ||||| | | || ||| |||||| | | Sbjct 4190 AGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGAGTTTCCCAGTGACGGA 4131 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 ||| || ||||||||||| || |||||||||| |||||||| ||||| ||||||| Sbjct 4130 GATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGCTTCGGCTTTCTTGTACA 4071 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | ||| | | || || || ||||||| || ||||| Sbjct 4070 TTTCCCATACTTGTGGGTATTGGATCGGAAACAT-ACAAA 4032 >seq10024 Length=53621 Score = 181 bits (200), Expect = 9e-41 Identities = 569/870 (65%), Gaps = 11/870 (1%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| ||||| || |||| || ||||||||||| ||||| |||| |||||||| Sbjct 15289 TTTCTGGTACTCACCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAG 15230 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| |||| || || || | |||||| ||| | || || ||| | | Sbjct 15229 TTCCATCCAATCGAAAGGGTTTACAACATTGTAAATTTTCCCGTACCCTAACGCTCCCAA 15170 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || ||||| || || || ||||| ||||| | |||| |||||| || | ||| Sbjct 15169 CAACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCTGTTAATCCCTACTAA 15110 Query 4436 TCTCACAGGTA-GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | |||||| | | |||| || ||||||| ||||| ||||| ||| | | || Sbjct 15109 -CGCACAGGGAAGAGCGTCGCACACAAACTCTCTCTCTATGTCAACGGCCTCTCTTACTA 15051 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATC-CAAACAATAAACACGCA 4553 | | || | |||| | || | | || | | ||| || || ||| Sbjct 15050 TCCCCTTCACGCGCTCTTCGCTCAGCTT-TGACCGGAGGAGATCGTACAGCAAGCAAGCA 14992 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||||| || || | ||||| |||| || | || | || || || || |||||||| || Sbjct 14991 AAATCGCAGTGGAGGCCTTCATCTC-GCGAGATTAACTCATTGGAGAAAGTTAATCCAGG 14933 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 |||||| || | |||||| | ||||||||| ||| || ||||| || ||||| || Sbjct 14932 CATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAATATCCC 14873 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 || | | ||||| || | || || |||| | | || | | || ||||| Sbjct 14872 CTCAATGCAAGCAAAAGCGATCAACCGCTCGGCGAAAG---TTTCTCCGCCGTTGATCCA 14816 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||| | ||||| | |||||||| |||||||| | || | || || || | Sbjct 14815 TTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGCACGGAAGAG 14756 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 || ||||| | |||| || ||||| || | || || || ||||| || || Sbjct 14755 GCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACTGTACATCTCGGA 14696 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAA 4911 || |||||||| || || ||||| || || || |||||| | || || | | ||| | Sbjct 14695 GTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCGGAGATTTGGA 14637 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 | || || || | | | | ||||| || ||||| || ||| ||||||| Sbjct 14636 CCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCGGAGGCAGCAAAAA 14577 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || | ||| || | || |||| | ||||| | | || ||| |||||| || | Sbjct 14576 AGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTCCCAGTGTGGGA 14517 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 ||| || ||||| ||||| || ||||||||||||||||||| ||||| ||||||| Sbjct 14516 GATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACA 14457 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAA 5121 | ||||| | || || || ||||||| Sbjct 14456 TTTCCCAAACCTGTGGGTATTGGATCGGAA 14427 >seq9751 Length=50749 Score = 181 bits (200), Expect = 9e-41 Identities = 542/825 (66%), Gaps = 11/825 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||||||||| || | |||||||| |||||| ||||||| Sbjct 49594 ACTCTCTTCTCGAAGAAATTAGTTTTCCCCTGCAACGAAATCAGTTCCATCCAATCAAAT 49535 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | | ||||| || | || | || | |||| || || ||||| Sbjct 49534 GGATTTGCAACATTGTACATCTTCCCGTACCCCAACGCGCCCAGCAGCCGATCCGCTACG 49475 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450 || || || ||||| ||||| | |||| ||| || |||| ||| | |||| || || Sbjct 49474 AACTCGATGTACTGACTCATTAAATCGCCGTTCATACCAACCAATG-CGCAGGGCAGAGC 49416 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || ||||| |||||| ||||| ||| | ||||| |||| | || Sbjct 49415 GTCGCACACGAACTCCCTCTCTATATACACGGCCTCTTTTATTATCCCTTTCACGCGCTC 49356 Query 4511 TTTAGATGGTTTATTTACTAAGTATC-CAAACAATAAACACGCAAAATCACAATGCAAAC 4569 || | | ||| | |||| | |||| || || || |||||||| || | || Sbjct 49355 TTCACTGAGCTTAGAC-CGGAGTAGATCGTACAACAAGCAAGCGAAATCACAGTGGAGAC 49297 Query 4570 CTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 | ||||||| || | || | ||||| || || |||||||||||||||||||| | |||| Sbjct 49296 CCTCGTCTC-GCGATATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAAACCGCGCTTT 49238 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || | ||| ||||| ||| || || || || || || || || ||| ||||| Sbjct 49237 TTCAACCAGAATATGGCGCAGAAACTTCCGGAGAAAAAGATCCCCTCGACGCAAGCAAAG 49178 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 || | || || |||| | | || | || |||||||| | ||||| | Sbjct 49177 GCGATCAACCGCTCGGCGAAAG---TTTCTCCTCCGTTGATCCATTTCATGGCCCACTCG 49121 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808 || ||||| || ||||| | || | || ||| || | | || |||||| Sbjct 49120 GCCTTTTTAGCCACACACGGCACCGTTTCAATGGCGCGGAAGAGTCGGCTCTTTTCATCG 49061 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 | ||| | || || || || | || || || ||||| ||||| |||||||| || ||| Sbjct 49060 GAGTCCTTGATGTAGGTCTCCAAAAGGAGACTGTACATCTCAGAGTGTATATTCTCAATA 49001 Query 4869 GCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 || || || || ||||| ||||| | || || | | ||| || || || ||| | Sbjct 49000 GCGATTTGGAAACCGTAGAAAGCC-CGCGCCTCGGAGATTTGGACCTCTTTCATAAACCG 48942 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 | | | |||||| || || ||||| ||| || ||||| || | |||||||| Sbjct 48941 AACGGCGAGGTTTTCAAGGACGATTCCGTCGGAGGCGGCGAAAAAGGCAAGAACATGAGT 48882 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 || |||| | || || | | ||| ||| |||||| | | ||| | | ||| Sbjct 48881 GATGAAGTGGCGCTCATCGGCGGTGAGTGTTTCCCAGTGACGGAGATCGGATGACAGATC 48822 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 || || || | ||||||||||||||||| ||||| |||||||| Sbjct 48821 GACCTCCTCGGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACAT 48777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426646300763504