Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq25691 226 2e-54 >seq25691 Length=1910 Score = 226 bits (250), Expect = 2e-54 Identities = 383/555 (69%), Gaps = 0/555 (0%) Strand=Plus/Minus Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759 |||||||||||| | || | || || || |||| || || | || || ||||| || Sbjct 576 ATAGTTATCAAATCTAGACCAATGTCCATTGAAAGTTAAACTAATTGTTCCGATTGGTCC 517 Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819 ||||| ||| ||||| || || | ||| || || || || | ||||||| || || Sbjct 516 ATTTCTTTGTTTTCCAATTATAATCTCTGCTATACCTTTAAAATCGCTATTTTCATGGTA 457 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 | ||| || ||||| | |||||| || | |||||||| || || | || || ||||| Sbjct 456 TATTTCATCTCGATATATAAACATTATTAAATCTGCGTCTTGTTCTAATGAACCAGATTC 397 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTG 96939 | ||||||||| ||||| |||| ||| || || | ||||| | || ||||| | ||| Sbjct 396 TCTTAAATCTGAGTTTACTGGTCTTTTATCTGCTCTTTGTTCTAAAGAACGATTTAATTG 337 Query 96940 TGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAAT 96999 |||||| || | || || ||||||| ||| || || | ||| || | || | ||||| Sbjct 336 TGACAAAGCGATTACTGGGACTTGTAGTTCTTTTGCGAGCGCTTTTAATGTTCTGGAAAT 277 Query 97000 CTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGCAGGTA 97059 || |||||||| || |||| |||||| || || || | ||| ||||| | || Sbjct 276 TTCAGCAATTTCAAGAGTTCTATTATCTGAAAGAGATGGAACTCTCATCAGTTGTAAATA 217 Query 97060 GTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAACG 97119 || | |||||| | | |||||| |||||| ||||| ||||||||| || || || Sbjct 216 ATCTACCATAATTAAAGTTAAACCATTATTTTCACGATAAATACGACGAGCTCGAGAGCG 157 Query 97120 TAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAACAG 97179 | || | || || || || || ||||| ||| |||| |||| || | ||||| Sbjct 156 AACTTCACTAGGTGTAAGAGCTGAAGAATCATCTATATAAATGTTCTTTTTTTTCAACAA 97 Query 97180 AATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAAT 97239 || | |||| ||||| | | | |||||| || || || | || ||||||| || Sbjct 96 AACATTAATTGTCCCAGACATTCTAGACCAATCTTCATCATTTAATTTACCTGTTCTGAT 37 Query 97240 ACGAGTCTGATCAAC 97254 || | ||||| ||| Sbjct 36 GCGTGCCTGATTAAC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330586703759008