Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10024 91.5 2e-13 >seq10024 Length=53621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 289/443 (65%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || |||||||| || || ||||||||||| | || || ||||| || || ||| Sbjct 15000 AAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTT 14941 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAA 23624 ||||| |||||||| || || ||||| | ||||||||| || ||| || ||| || || Sbjct 14940 AATCCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAACTTCCAGAGAA 14882 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 || || ||||||| ||||| || | | || | || || || | | Sbjct 14881 AAATATCCCCTCAATGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGT----TTCTCCGC 14826 Query 23685 AG-AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA----ATTGTTTCA 23739 | |||||||| | | ||| | || | ||||| ||| || | |||||| Sbjct 14825 CGTTGATCCATTTCATAGCCCACTCGGCTT----TTTTAGCCACGCACGGCACCGTTTCA 14770 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 || || ||||| | ||||| || |||| | || || || || | || | | Sbjct 14769 ATGGCACGGAAGAGGCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGA 14710 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 || ||||| || || || ||||||||||| || ||||| || ||||| ||| | || Sbjct 14709 CTGTACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCACGCGCC 14650 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || || | ||| || || || | || | || | |||||| || |||||||| Sbjct 14649 TCGGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCG 14590 Query 23920 CTAGCAGCAAAGAAAGCAAGAAC 23942 |||||||| || || ||||| Sbjct 14589 GAGGCAGCAAAAAAGGCGAGAAC 14567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520982886723200