Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq109206 118 2e-21 seq131845 102 2e-16 seq130505 100 6e-16 seq108749 100 6e-16 seq101391 100 6e-16 seq29077 100 6e-16 seq132097 98.7 2e-15 seq132076 98.7 2e-15 seq131963 98.7 2e-15 seq131769 98.7 2e-15 seq131578 98.7 2e-15 seq130700 98.7 2e-15 seq128121 98.7 2e-15 seq127819 98.7 2e-15 seq120906 98.7 2e-15 seq120620 98.7 2e-15 seq96070 98.7 2e-15 seq89014 98.7 2e-15 seq79948 98.7 2e-15 seq79909 98.7 2e-15 seq60206 98.7 2e-15 seq28096 98.7 2e-15 seq12075 98.7 2e-15 >seq109206 Length=27697 Score = 118 bits (130), Expect = 2e-21 Identities = 316/475 (67%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 230168 AATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 |||| || || ||||| | |||| | | || || || || || | || ||||| | Sbjct 8174 AATCTTTCGCGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAA 8115 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 | |||||||| || |||||||| ||| || ||||||| || ||| | |||| Sbjct 8114 GCTTCTGCGCGATATTTTGGCTAAAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTA 8055 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||||| || || || || || | || | |||| || | || | || | Sbjct 8054 ACGAGTTGATATCGCGAGATGAAGGGTTACACTGCGATTTCG-CGTGTTT--GCTTTACA 7998 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTG 230404 ||| | ||| ||| | |||| | |||| |||||| || || |||| Sbjct 7997 CGCTTCTGAAGAAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTTG 7938 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCT 230463 | | ||| | ||||||| | ||||| ||| | || ||| || || ||| ||||||| | Sbjct 7937 ATATCGAGAGGGAGTTCGTCTGTGATGCTCTGCCTTGT-GCGTTGGTGGGTATGAACGGT 7879 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || |||||| | |||| ||||| ||||| || || || | | | ||| | |||||| Sbjct 7878 GATCTTATGTGCAAGTATATCGAGTTCGTGGCTGATCGATTGATGGATGCGTTGGGTTAC 7819 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 | || | ||||| | |||||||||||| | |||||||| || ||| | || || Sbjct 7818 GCCAAGATCTACAATGCCCAGAACCCCTTTGATTGGATGGAGCTGATATCGTTGCAGGGT 7759 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATC-AGAGGCCTGGTGTGATG 230637 |||||||||||||| || ||| | || | || || | | |||||| ||||||| Sbjct 7758 AAGACCAACTTCTTTGAGAAGAGGGTTGGAGAGTACCAAAAGGCCT-CTGTGATG 7705 >seq131845 Length=110211 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 27154 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 27213 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 27214 GCCCCACGGTGGGC 27227 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||| ||| |||||||||| ||||| |||| || |||||||||||||||||| Sbjct 107263 GCCCGTCTAGCGCAGATGGTAGAGCGCAAGACTCTTAACCTTGTGGTCGTGGGTTCGAGC 107322 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 107323 CCCACGGTGGGC 107334 >seq130505 Length=82232 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 56625 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56684 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 56685 CCCCACGGTGGGC 56697 >seq108749 Length=27216 Score = 100 bits (110), Expect = 6e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 281793 CCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCC 281852 ||||||||||| | ||| || || |||||||| || || || |||||||| ||| Sbjct 1462 CCAAACTGACCATTTGGCTGTAAAAGATTGATGTTATTACTACCCACATAATCCTGTGCC 1403 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCA 281912 | | ||| || || ||| ||||||| ||||||||||| ||||| | Sbjct 1402 ATTCCAATGATGGTACCGGCAAGACTCGCCTCACCATGGTGATAGGCTGAATGTTCAGAT 1343 Query 281913 ACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAA 281972 ||||||||| ||||| || ||||| | ||| | ||||| | ||||||| ||| Sbjct 1342 ACATAACCAGAAAACTGAGCAACCTTTGCTTCTTTTACAAAGTTCCTCTTGAAAGAACAA 1283 Query 281973 TATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCC 282032 | | | || | |||| |||||| | |||||||| | || |||||| | || Sbjct 1282 AAGAGGATCTTCCTTTGACCAGGCTTTAGGCCATCAACCATTGAAGGAATGGACCTTTGT 1223 Query 282033 AGGTCATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCG 282077 || ||| | || ||||| ||||||||||||| || |||||| Sbjct 1222 AGATCAGCCAAAGAAAACAATATAAGTTCCTTGTGAACAAAGTCG 1178 >seq101391 Length=21510 Score = 100 bits (110), Expect = 6e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 ||| ||| | |||||||||||||||| |||||||||| || || |||| || ||||||| Sbjct 4714 TTATAACACAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 4655 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 4654 TGGGTTCGAGCCCCACGGTGGGC 4632 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4026 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3967 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3966 CCCACGGTGGGC 3955 >seq29077 Length=2117 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1973 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2032 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2033 CCCCACGGTGGGC 2045 >seq132097 Length=197377 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 115345 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 115404 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 115405 CCCACGGTGGGC 115416 >seq132076 Length=114131 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 44763 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44704 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44703 CCCACGGTGGGC 44692 >seq131963 Length=112426 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 90268 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 90209 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 90208 CCCACGGTGGGC 90197 >seq131769 Length=100860 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 56101 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56160 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56161 CCCACGGTGGGC 56172 >seq131578 Length=96664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 90302 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 90243 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 90242 CCCACGGTGGGC 90231 >seq130700 Length=82521 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 15274 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15215 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15214 CCCACGGTGGGC 15203 >seq128121 Length=66706 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 42190 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42131 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42130 CCCACGGTGGGC 42119 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 42892 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42833 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42832 CCCACGGTGGGC 42821 >seq127819 Length=62675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22365 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22306 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22305 CCCACGGTGGGC 22294 >seq120906 Length=42800 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17064 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17005 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17004 CCCACGGTGGGC 16993 >seq120620 Length=83226 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 79010 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 78951 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 78950 CCCACGGTGGGC 78939 >seq96070 Length=18071 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10367 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10308 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10307 CCCACGGTGGGC 10296 >seq89014 Length=14301 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14178 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14119 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14118 CCCACGGTGGGC 14107 >seq79948 Length=10674 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10203 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10144 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10143 CCCACGGTGGGC 10132 Score = 96.9 bits (106), Expect = 7e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||||| |||||||| |||||||||| || || |||| || ||||||||| Sbjct 297 AAAACAACTGCCCGTCGAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTG 238 Query 165761 GGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||| ||||| Sbjct 237 GGTTCGAGCCCCACGGTGGGC 217 >seq79909 Length=10732 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9867 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9926 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9927 CCCACGGTGGGC 9938 >seq60206 Length=4484 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2484 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2543 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2544 CCCACGGTGGGC 2555 >seq28096 Length=2000 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1047 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 988 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 987 CCCACGGTGGGC 976 >seq12075 Length=1158 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 104 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 163 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 164 CCCACGGTGGGC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056028503755880