Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq109206 140 3e-28 >seq109206 Length=27697 Score = 140 bits (154), Expect = 3e-28 Identities = 563/873 (64%), Gaps = 19/873 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||| | || || || ||||| || || |||| | ||||| || Sbjct 7719 TTTGGTACTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTACCCTGCAACGATATCAGCT 7778 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| || || || | || || | ||| |||| | | || | Sbjct 7779 CCATCCAATCAAAGGGGTTCTGGGCATTGTAGATCTTGGCGTAACCCAACGCATCCATCA 7838 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||| ||| || || || || ||||| | |||||| | || | |||||| || | | || Sbjct 7839 ATCGATCAGCCACGAACTCGATATACTTGCACATAAGATCACCGTTCATACCCACCA-AC 7897 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | || || ||||| || | || || | ||| ||| |||| || || || || Sbjct 7898 GCACAAGGCAGAGCATCACAGACGAACTCCCT-CTCGATATCAACGGCATCGCGGATGAT 7956 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 | ||||| |||||| | | | | || ||| | | | | || ||| ||||| Sbjct 7957 TCCCCTGACTCGCTCCTCGCTCAGCTTCTTCTTCAGAAGCGTGTAAAGCAAACACGCGAA 8016 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGC 17029 |||||| ||||| || || |||| || |||| | |||||||| || || | || ||| Sbjct 8017 ATCGCAGTGTAACCCTTCATCTC-GC-GATATCAACTCGTTAGAGAACGTGAGACCCGGC 8074 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| || |||||||||| ||||||||||||| ||| || || ||||| || ||| Sbjct 8075 ATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCC 8134 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TC-GCGTCTTTGTTACGAATC 17146 |||||| | || |||||||| || || || ||| | | || | | | | | ||| Sbjct 8135 TCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGTCG------ATC 8188 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || || |||||| || || | | ||| || || || ||||| | ||| Sbjct 8189 CACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAG 8248 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | | || || |||| | || || || || | | || |||||||| || Sbjct 8249 AGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACATCTCA 8308 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||||| || ||||| || || ||||| || || |||||| || || ||||| | |||| Sbjct 8309 GAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGACTTGA 8368 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 | ||| ||| | | | || ||||| || ||||||||||| ||||| || Sbjct 8369 ATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCAAAG 8428 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCGCCAGTCCTT 17445 || || | | ||| |||||| | || || || || || | | | | ||| | | Sbjct 8429 AAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTC-CCATTGGGT 8487 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 |||| ||| | |||||| || || | ||||| || ||| | ||||| || || Sbjct 8488 ATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 8547 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | |||||| || ||| || || ||||| Sbjct 8548 CATCTCCCAAATCTCCGGGTACTGAATCGGGAA 8580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516688570363680