Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq108658 87.8 1e-13 >seq108658 Length=27099 Score = 87.8 bits (96), Expect = 1e-13 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 2770 TGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGCG 2829 ||||| ||||| || || || ||||| || || |||||||| |||| || || ||| Sbjct 8067 TGGATGTATGCGGCGCGGACGTTATTGCGTTCCTTGTGGCTCATCTGCCGTTCAATGGCG 8008 Query 2830 TCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGC 2889 || ||| || || ||||| || || | | ||||| | | ||||||||| Sbjct 8007 GTCTCCGACCACAATCCTGACTCGATCAGTGCGCTGCAGGCCATCGAACGAAACCCATGG 7948 Query 2890 CCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTTT 2949 || || | |||||||| || || ||||||||| || | |||||||| ||||||||| Sbjct 7947 CCGCAGATTTCGGTTTTGGTGTCGTAGCCCATCTTTCGAAGCGCGCTGTTCACCGTGTTT 7888 Query 2950 TCA 2952 ||| Sbjct 7887 TCA 7885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37026335252032