Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq109654 113 4e-20 seq86116 105 6e-18 seq115941 96.9 3e-15 seq97568 84.2 2e-11 >seq109654 Length=28343 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| ||||||| ||| | ||||||||||| |||||||| ||||| || Sbjct 18650 CCACCACGGAGCCTTAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 18709 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | || || ||||| || || ||| | || | ||||||||||| ||| Sbjct 18710 AGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 18769 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | | ||| || || | || | Sbjct 18770 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGATGATTCGACT 18829 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||| ||||| || || || || || || ||||| Sbjct 18830 TCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTAACGAAGATCTGCAT 18876 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||||| || | ||||||||||| || ||||| || || || Sbjct 18878 CCACCACGGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 18937 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||| ||||| || || ||| | || | |||||||| ||| || Sbjct 18938 AGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGA 18997 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | | | | ||||| || ||| Sbjct 18998 ATGCCTTCCTTGTCCTGTATCTTAGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACC 19057 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| || || ||||| || || ||||| Sbjct 19058 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 19104 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||||||||||| ||| | ||| |||||||| || || || || || ||| Sbjct 19106 CCACCACGGAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCGGCC 19165 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | || || ||||| || || || | ||||| |||||||||||| || Sbjct 19166 AGGGTTCTGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGAGGG 19225 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || || | ||| Sbjct 19226 ATCCCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 19285 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || |||||||| ||||||| |||||||| || || ||||| || Sbjct 19286 TCGAGAGTGATGGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCATATT 19335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| || || || ||||| | ||||| Sbjct 18437 AGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCCGTCC 18496 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || || ||||||||||| ||| | ||||||||||| Sbjct 18497 TCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCCTTGTCC 18556 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| || || || ||| || | || |||||| Sbjct 18557 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 18616 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || ||||| || || ||||| Sbjct 18617 TTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 18648 >seq86116 Length=13258 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| ||||| || | || || | |||| || |||||||| || || || |||||||| Sbjct 2478 TCCACCTCGGAGACGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCCGC 2537 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| | ||||||||||| || || || ||||||| ||||||||||| || Sbjct 2538 CAGGGTCCTCCCATCCTCCAGCTGCTTACCAGCGAAAATAAGCCTCTGCTGGTCTGGAGG 2597 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| |||||||| ||||| ||||| | | | || || | ||| Sbjct 2598 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATTGTGTCTGAGCTCTCAAC 2657 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| ||||| || || || || |||||||| |||||||| Sbjct 2658 CTCCAAGGTAATAGTCTTCCCAGTCAAGGTCTTGACAAAAATTTGCAT 2705 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | || |||||||| || ||||||||||| |||| |||| | | ||||| Sbjct 2952 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCGGCCAAGGTTCGTCCATCCTC 3011 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| ||||| ||| |||| || || |||||||| || | || |||||||| Sbjct 3012 GAGCTGCTTGCCAGCAAAAATGAGCCTTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTG 3071 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| |||||| | | | | ||||| || ||||| |||||||| || Sbjct 3072 GATCTTAGCTTTCACATTGTCAATTGTATCGGAACTTTCGACTTCCAAAGTAATGGTTTT 3131 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | || || ||||| |||||||| Sbjct 3132 CCCGGTAAGGGTCTTCACAAAAATTTGCAT 3161 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| ||||| | || |||| || | |||||||||||| || ||||| ||||| || Sbjct 2707 CCCCCACGCAGACGCAGTACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2766 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| ||||||| ||||| ||||| ||| | || | | ||||||||| ||| Sbjct 2767 AGGGTCCTCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGG 2826 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126 | || ||||| || |||||| || || | | ||| |||| ||| || || Sbjct 2827 ATACCCTCCTTATCTTGGATCTTCGCCTTAACATTGTCGATGGTAT--CCGAGCTTTCAA 2884 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| ||||| || || || || || || ||||| |||||||| Sbjct 2885 CTTCAAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCAT 2933 >seq115941 Length=36387 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || ||||||||||| ||||| ||||| || Sbjct 5350 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGCG 5409 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || || || || || | || | ||||||||||| ||| Sbjct 5410 AGTGTCCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 5469 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CG- 21126 | ||| ||||| || ||||| |||||| | | ||| || | ||| |||| || Sbjct 5470 ATGCCCTCCTTATCTTGAATCTTAGCTTTCACGTTGTCGATGGTGT--CCGAGCTCTCGA 5527 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| | |||||||| || |||||||| Sbjct 5528 CCTCCAAAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 5576 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| |||||||| || || || Sbjct 5122 CCACCACGAAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCG 5181 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | ||||| ||||| || || || | ||||| | ||||||||| ||| Sbjct 5182 AGAGTTCTCCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGG 5241 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| |||||| | | | | || || | |||| Sbjct 5242 ATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCCACC 5301 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || || | ||||||||||| |||||||| Sbjct 5302 TCCAAAGTTATGGTTTTTCCAGTGAGGGTTTTGACAAAGATTTGCAT 5348 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||| | ||| | ||||||||||||||| ||||| || || | Sbjct 4892 TTCCACCACGGAGACGAAGCACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGG 4951 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || ||||||| || || || || ||| | ||||||||||||||||| | Sbjct 4952 CAAGTGTCCTTCCGTCCTCGAGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTG 5011 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || ||||||| || || | | | | |||||| | ||| Sbjct 5012 GGATACCCTCCTTATCTTGGATCTTTGCCTTGACATTGTCAATAGTATCGGAGCTCTCAA 5071 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || || || ||||| | || || ||||| || ||||| Sbjct 5072 CCTCCAATGTTATTGTTTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 5120 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||||||||| |||||||||||||| ||| Sbjct 4438 CCACCACGAAGACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGCC 4497 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | || |||| |||||| || || |||| | |||||||||||| || Sbjct 4498 AAAGTCCTTCCATCTTCCAACTGTTTCCCAGCGAAAATTAACCTCTGCTGGTCCGGTGGG 4557 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| || ||| || || | | | ||||| | |||| Sbjct 4558 ATGCCCTCTTTGTCTTGAATTTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCCACC 4617 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || || ||||| || ||||| Sbjct 4618 TCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 4664 >seq97568 Length=18938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||||| | || | ||| | ||| ||||||||||| |||||||| |||| Sbjct 7136 TTCCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCCG 7077 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || ||| | | ||||||| ||| || || ||| | || | ||||||||| || | Sbjct 7076 CAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAG 7017 Query 21067 GCACGCCTTCCTTGTC 21082 | | ||||||||| || Sbjct 7016 GGATGCCTTCCTTATC 7001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421577440880816