Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq124742 89.7 2e-13 >seq124742 Length=51505 Score = 89.7 bits (98), Expect = 2e-13 Identities = 249/371 (67%), Gaps = 22/371 (6%) Strand=Plus/Plus Query 14002 GCCATCATGGCGCACGCCGCTGCGGAATATCCGCGCGAGTGCTGCGGCGTGGTAGCGCAG 14061 |||||| ||||||||| || || | |||||| || || |||||| || | || || Sbjct 28197 GCCATCCAGGCGCACGCGGCGGCCCAGTATCCGAAAGAATGTTGCGGCCTGTT-GCTCAC 28255 Query 14062 AAAAGCCGGGTTGAGCGC-----TATTTCCCCTGCCGCAACCTCTCAGCCGAGCCGACAG 14116 | | | ||||| || ||||| ||||| ||| || | ||||||||| | Sbjct 28256 CATTGGCAA----AGCGCAGAAGTACTTCCCGTGCCGGAACATCGCCACCGAGCCGAGCG 28311 Query 14117 AGCATTTTCACCTTTCTCCTGAAGACTACGCAGCTGCCGAGGAC-TGGGGGACGGTGGTG 14175 | | || | || ||| |||||||| || || || || ||| |||| || |||| | Sbjct 28312 AAGAGTTCCGGCTCGATCCCGAAGACTATGCCGCGGCGGAAGACCTGGGCGA-GGTGATC 28370 Query 14176 GCCATTGTTCACAGCCACCCTGACGCCACGACACAGCCGAGCGA-ACTGGATAAAGCG-C 14233 | |||||| ||| |||||||| ||||| |||| | || || | || | | | Sbjct 28371 GGCATTGTCCACTCGCACCCTGATGCCAC----CAGCAGGCCGTCACCGCATGACTTGGC 28426 Query 14234 AATGTG--ATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTACG 14291 ||||| | || ||| |||||||||||| ||| || |||||| ||||| || | || Sbjct 28427 CATGTGCGAGGCCACGGCGCTGCCCTGGCACATTTTGTCCTGGCCCGAGGGAGACATGCG 28486 Query 14292 CACTATTCAGCCGCGCGGGGAAC-TGCCGCTACTGGAGCGCCCGTTCGTGCTTGGCCACT 14350 ||| || |||| |||| | | |||||| || | || |||||||| | ||| || Sbjct 28487 CACGATCACGCCG-ACGGGCAGCACGCCGCTGCTCAATCGGCCGTTCGTACACGGCGCCT 28545 Query 14351 TTGATTGCTGG 14361 || |||||| Sbjct 28546 GGGACTGCTGG 28556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148045135464344