Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq115941 109 8e-19 >seq115941 Length=36387 Score = 109 bits (120), Expect = 8e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || ||||| || || | ||| | || ||| Sbjct 4893 AATGCAAATTTTTGTGAAGACCCTTACGGGAAAAACCATCACCCTCGAGGTCGAGAGCTC 4834 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| |||| |||||||||||| || || || || || || || | Sbjct 4833 -TGATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCCCCGGACC 4775 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| ||| | |||||||| || || ||||| |||||| | | || | | ||||| | Sbjct 4774 AACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACA 4715 Query 124717 ATATTCAAAAAGAATCAAC 124735 | || || || |||||||| Sbjct 4714 ACATCCAGAAGGAATCAAC 4696 Score = 86.0 bits (94), Expect = 9e-12 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || || || || ||| | ||| | || ||| Sbjct 4664 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCG 4605 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||||||||||| ||||| || || ||||| || || Sbjct 4604 -GATACCATTGATAATGTCAAGGCAAAAATTCAAGACAAAGAGGGCATCCCACCGGACCA 4546 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||| || || ||||| || || ||| | | || || | || ||||| Sbjct 4545 GCAGAGGTTAATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGACTATAA 4486 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772 ||||| || || || ||| | || | || | ||| | || ||||| | ||||| Sbjct 4485 CATTCAGAAGGAGTCCACTCTTCACCTTGTCCTCCGTCTTCGTGGTGGCTTTTAAA 4430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754205002636800