Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq115941 109 8e-19
>seq115941
Length=36387
Score = 109 bits (120), Expect = 8e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
||||||||| ||| | ||||| || || || ||||| || || | ||| | || |||
Sbjct 4893 AATGCAAATTTTTGTGAAGACCCTTACGGGAAAAACCATCACCCTCGAGGTCGAGAGCTC 4834
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|||||||||| ||| |||| |||||||||||| || || || || || || || |
Sbjct 4833 -TGATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCCCCGGACC 4775
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
|||| ||| | |||||||| || || ||||| |||||| | | || | | ||||| |
Sbjct 4774 AACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACA 4715
Query 124717 ATATTCAAAAAGAATCAAC 124735
| || || || ||||||||
Sbjct 4714 ACATCCAGAAGGAATCAAC 4696
Score = 86.0 bits (94), Expect = 9e-12
Identities = 163/236 (69%), Gaps = 3/236 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| | || || || || || ||| | ||| | || |||
Sbjct 4664 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCG 4605
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| |||| | || ||||||||||| ||||| || || ||||| || ||
Sbjct 4604 -GATACCATTGATAATGTCAAGGCAAAAATTCAAGACAAAGAGGGCATCCCACCGGACCA 4546
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | ||||| || || ||||| || || ||| | | || || | || |||||
Sbjct 4545 GCAGAGGTTAATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGACTATAA 4486
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772
||||| || || || ||| | || | || | ||| | || ||||| | |||||
Sbjct 4485 CATTCAGAAGGAGTCCACTCTTCACCTTGTCCTCCGTCTTCGTGGTGGCTTTTAAA 4430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754205002636800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |