Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq124742 93.3 1e-14 >seq124742 Length=51505 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15432 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAAGC 15491 ||| |||||| ||| | |||||| || | ||||||||||||||| | | || || || Sbjct 34727 GCGCTACGGCGACAACCCGCTGGAGATCAGCGCCATCGGCTGCACCCGCGAATCCGAGGC 34786 Query 15492 GAACCGAAAGGGGCGCTGGGGCATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15551 | || ||| |||| | ||||| ||| ||||||||| | ||| | || | Sbjct 34787 CCAGCGCCGGGGCAAGTGGGCGCTGCTCACGAACTCCAAGGATCGGGCGGTTACCTTCAA 34846 Query 15552 TGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTGGCAGACGAGCT 15611 ||||| || ||||| ||| |||| |||||| ||| | ||| || | || ||||| || Sbjct 34847 GGTCGGCCTCGACGGGCGCATCCCGCTGCCTGGATACGTGATCCCCATCGCGGACGAACT 34906 Query 15612 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15671 ||| |||| | ||||||| || ||| || || ||||| || |||| || Sbjct 34907 GCTGGCCGGCCGGCCGGTGGGCGGGCGTATCTCAGCGGTGAACGGCAAGGTCATCACCCT 34966 Query 15672 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCC 15722 ||||||| | | || || || || || || || |||||||| || Sbjct 34967 GGACCGCGACACCCAAGCCAAGCCCGGCGACCGGCTGATCCTCAACCTGCC 35017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130076647175256