Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq124742 93.3 1e-14 >seq124742 Length=51505 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 16436 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 16495 ||| |||||| ||| | |||||| || | ||||||||||||||| | | || ||||| Sbjct 34727 GCGCTACGGCGACAACCCGCTGGAGATCAGCGCCATCGGCTGCACCCGCGAATCCGAGGC 34786 Query 16496 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 16555 | || ||| |||| | ||||| || ||||||||| | ||| | || | Sbjct 34787 CCAGCGCCGGGGCAAGTGGGCGCTGCTCACGAACTCCAAGGATCGGGCGGTTACCTTCAA 34846 Query 16556 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 16615 ||||| || ||||| ||| |||| ||| || ||| | ||| || | || ||||| || Sbjct 34847 GGTCGGCCTCGACGGGCGCATCCCGCTGCCTGGATACGTGATCCCCATCGCGGACGAACT 34906 Query 16616 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16675 ||| |||| | ||||||| || ||| || || ||||| || |||| || Sbjct 34907 GCTGGCCGGCCGGCCGGTGGGCGGGCGTATCTCAGCGGTGAACGGCAAGGTCATCACCCT 34966 Query 16676 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16726 ||||||| | | || || || || || || || ||||||||||| Sbjct 34967 GGACCGCGACACCCAAGCCAAGCCCGGCGACCGGCTGATCCTCAACCTGCC 35017 Score = 84.2 bits (92), Expect = 6e-12 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 15744 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGATGCCAAACTGCG 15802 |||||| |||||||||| | | || | |||||||||||||||| || ||||| | || Sbjct 34038 AAGATCTCCGACACGATGCAGATTGCCG-GCTTCACCGAGGTGATCGACGCCAAGATCCG 34096 Query 15803 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 15835 |||||||||||||||||||| ||| |||| || Sbjct 34097 ATACCCGAACACCGCGCTGCTTTACATCGAGTT 34129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126820976910928