Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq124121 176 2e-39 seq27595 170 7e-38 seq27057 93.3 2e-14 seq34304 84.2 8e-12 >seq124121 Length=49848 Score = 176 bits (194), Expect = 2e-39 Identities = 269/383 (70%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 3707 ATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGCAAAA 3766 ||| |||||| ||| || || |||| ||| ||||| || || || ||||| || ||| Sbjct 20508 ATCTCCATCTTCGACCCTATCGGCTTCGATCCCTGGACAGGCGAGGGCGTCACCGCGAAA 20567 Query 3767 CGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACATCAAC 3826 |||||||| | ||| | ||| | |||| | || || || | || |||||||||||| Sbjct 20568 CGCATTGCCGCCGCGTTACGCACTATCGACGGCGCTGACGTT---ACGGTGAACATCAAC 20624 Query 3827 AGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCACAAG 3886 || ||||||||| | |||||||||||||| || |||||||||||||| ||| || Sbjct 20625 TCGCCGGGCGGCGACATGTTCGAAGGCCTGGCTATCTACAACCTGCTGCGGGAGTACTCC 20684 Query 3887 GGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGCCATG 3946 ||||||||| | || | | || ||||| || || || || || | | || ||| Sbjct 20685 GGCAAGGTCGTCATCAAGGTGCTGGGGCTGGCCGCATCGGCAGCATCAATTGTTGCTATG 20744 Query 3947 GCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCATAACGCCTGGCTG 4006 || || || || | ||||||| |||||||| || |||| || ||||| |||| | Sbjct 20745 GCCGGAGACGAGGTGCGCATCGCCCGCGCCGGATTTCTGAACATTCATAATTGCTGGGTA 20804 Query 4007 ATCGCCATGGGTAATCGGAATGATCTCCGTGAGATAGCCGATTGGCTGGAGCCATTCGAC 4066 | |||||||| ||||| |||| || ||||| || | ||||| || ||||| Sbjct 20805 GTTGCCATGGGCAATCGTTATGACCTTACAGAGATGGCGCAGAGGCTGTTACCGTTCGAT 20864 Query 4067 ATGACGCTGGCTGACATTTACGC 4089 | | |||| || || ||||| Sbjct 20865 CAGGCCATGGCAGATATCTACGC 20887 Score = 105 bits (116), Expect = 2e-18 Identities = 242/360 (67%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 5266 CGCCTGGCGATCCTTCAGGCGCAACTGGC-CGAGTTCCCGGCCAGCGGTATCGTGCTCAA 5324 |||||||| || || || || ||||| || ||| | ||| |||| || || || | Sbjct 23011 CGCCTGGCAATGCTGCAAGCCCAACTCGCGCGACTGCCCT-CCAGTGGCCATGTTCTGCA 23069 Query 5325 CCCCATCGACTGGGCGCTGATCGAGCTGAACAAGGACGCCGAGAACCGTTACATCATCGG 5384 | ||||||||||| ||||||||||| ||| ||| || | ||| ||||| ||| Sbjct 23070 CTTTATCGACTGGGCCAAGATCGAGCTGACCAAAGACACCTTGGGCCGCTACATACTCGC 23129 Query 5385 CAGCCCGCAGAACGGCACCACTCCGACCCTCT---GGCGTCTGCCGGTGGTGGAAACCCA 5441 || ||| | | ||| | || | | | | || | ||||| ||||||| ||| | Sbjct 23130 CAACCCTCTG---GGCCTCGCTGGGCCTGTGTTGTGGGGCCTGCCAGTGGTGGCGACCGA 23186 Query 5442 GGCCATCAC---TCAGGACGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTT 5498 ||||| | | | | ||||||||||||| || ||| | ||||| ||| | || Sbjct 23187 GGCCAGTGGGTTTGAAGGCAAGTTCCTGACCGGCGCCTTCCGTACTGGCGCGCAGTTGTT 23246 Query 5499 CGACCGCATGGACATCGAGGTTCTGGTTTCCACCGAGAACGACAAGGACTTCGAGAACAA 5558 |||||| ||| | || || | ||||||||||| | ||||||||||| || Sbjct 23247 CGACCGGGAAGACGCTAACGTAGTGATCAGCACCGAGAACGCGGACGACTTCGAGAAAAA 23306 Query 5559 CATGGTCACCATCCGCGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAGGCTTT 5618 | || || |||||||| ||| || || | ||| | || || | ||||||||||| || Sbjct 23307 CCTGATCTCCATCCGCTGTGAAGAACGCGTCGCCCTGGCCGTGAAGCGCCCCGAGGCCTT 23366 >seq27595 Length=1905 Score = 170 bits (188), Expect = 7e-38 Identities = 405/609 (67%), Gaps = 11/609 (2%) Strand=Plus/Plus Query 35112 TCATGCTGCCACCCCCAGCACCTTCTCCATACGCTCCTCGAGCAGTTCGTAGAAGGTCTT 35171 |||||| || || ||||| || | ||| || || || |||||||||||||||| | Sbjct 985 TCATGCGGCTACTCCCAGAACGCGATTCATGCGTTCATCCAGCAGTTCGTAGAAGGAGAT 1044 Query 35172 TACTCGCTCGGACAGCTTGCGTATGTAGGCCTCATCGCGGTGGACGCGCACCATGCAAAG 35231 || || | | |||| || | ||||| |||| | ||| || | | || Sbjct 1045 GACGCGGGCCTGGATCTTGGCGATCAGCTCGTCATCCCGGTACGCACGCTTCACGAACAG 1104 Query 35232 CGGCATGCCTGGCCAGTAGCCGAGGAAGTCGATCCACTCGCGCTCCGAAACCCAAAGGCC 35291 ||||||||| |||||||||| || ||||||||||||||||||||| || ||||| ||||| Sbjct 1105 CGGCATGCCCGGCCAGTAGCTGATGAAGTCGATCCACTCGCGCTCGGATACCCATAGGCC 1164 Query 35292 TCCATAGCACTGAGCCGCGTGCTCGTAAGGCAGCTCGCCTGCGATGATCACGCTCACCAG 35351 | | |||||| || ||| || | || | |||||| |||| |||||| | ||| | Sbjct 1165 GGCCTGGCACTGGGCGATGTGTTCCTTGGGGATCTCGCCGGCGAGGATCACACCGACCTG 1224 Query 35352 CTTTTCCGGCACCTTGGTTTTCACCTCGATCAGGCCGTTGTCGCCGACTAGGCCATCCGG 35411 | |||| ||| | || | ||||| |||||||| ||||| | ||| || || Sbjct 1225 AAACTTGGGCAGCTTCGACTTGATCTCGACCAGGCCGTCAGTGCCGATCAAGCCGTCAGG 1284 Query 35412 CGAATAGCCAATTCCGTGGTTGAGAATGATGCCGACCTGCTGGATCTGATCTGGCTCAGT 35471 ||| ||||| || || |||||||| ||||| |||||||| | | || | | ||| || Sbjct 1285 CGAGTAGCCGATACCATGGTTGAGGATGATCCCGACCTGGTCGGTCCGGCATTCCTCGGT 1344 Query 35472 ATCTGTGCGCAGGCAGTACAGGTCGCGTACAACCGGCTCAAGCTTGTGACCCCTGGCGCT 35531 ||| ||| || || | ||| | ||| |||| | || || || | || | Sbjct 1345 GTCT----GCA-----TAGAGCTTGCGGGCCACCAGCTCCATCTCATGGCCGCGTTCGGT 1395 Query 35532 GCTACCGTTACCACGCCATGGCTCGGCCTCTGCTCCGGTGATCCGCTCACCAATCAGGCG 35591 | | ||| || | | | || || | || ||||| |||||||| ||||| | Sbjct 1396 GTGGCGGTTGCCGCCAAACGCGTCAGCAGACACACCCGTGATGCGCTCACCGATCAGCTG 1455 Query 35592 GTCCATGTATGTGAAAGCGCCAACGCCGAACCCTGCCTGGACTTTGCCGTTAACCATCAA 35651 ||||||||| | | || || | ||||| || || | |||||||| |||| | | Sbjct 1456 GTCCATGTAGCTCAGTGCCTCAGCACCGAAGCCACGCTCTCCCTTGCCGTTGACCAGC-A 1514 Query 35652 CACGTCC-AGTTCGGAGCAGGTTGCGATTCCAAGACGCGCGTCAAGCCACTCCTGGGAGC 35710 | ||| | |||||| || ||| ||||| | | | ||||| || | |||| Sbjct 1515 GGCTTCCAACTTCGGAAGCCGTGATGATCCCAAGCCTGACCGCCAGCCAGTCTTCAGAGC 1574 Query 35711 CCTGCTCCA 35719 | ||||||| Sbjct 1575 CTTGCTCCA 1583 >seq27057 Length=1822 Score = 93.3 bits (102), Expect = 2e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | |||| | |||||||||||| || Sbjct 212 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAAC 153 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || || | |||||||||||| | |||| | || || || || || |||||||| | Sbjct 152 AACGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCGGGTGCGATCGAGCAGG 93 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 |||| ||| | | ||||||||||||||||| || || || ||| | | ||| | | Sbjct 92 ACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTATACCACCCCGAGACCGAGCACA 33 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAG 49131 | ||||||| ||| ||| | ||| | ||| Sbjct 32 AAGGCATCGCCGAGATCATCATCGGCAAG 4 >seq34304 Length=2423 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 104 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180157737845856