Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq115941 87.8 1e-12 >seq115941 Length=36387 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| |||||||| || || |||||||| || || | || | | ||| Sbjct 4681 AGCACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTGCCATCC 4740 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || ||| | || | || ||||| ||| ||| | || ||||| || Sbjct 4741 TCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTGTCT 4800 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | ||| || ||| | |||| || | ||||||| || Sbjct 4801 TGAATTTTCGCCTTTACATTGTCAATTGTATCAGAGCTCTCGACCTCGAGGGTGATGGTT 4860 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | || || ||||||||||||||| Sbjct 4861 TTTCCCGTAAGGGTCTTCACAAAAATTTGCATT 4893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378731529670620