Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq124121 269 9e-68 seq23952 264 4e-66 seq75625 141 3e-29 seq43093 120 1e-22 seq60391 100 1e-16 >seq124121 Length=49848 Score = 269 bits (298), Expect = 9e-68 Identities = 493/707 (70%), Gaps = 25/707 (4%) Strand=Plus/Plus Query 22908 GGCTTTCACAATGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGA 22967 ||||| |||| || | | || || || || ||||| |||||||| || || || || || Sbjct 39766 GGCTTGCACA-TGACCACCCCAATCATCCCTTGGATGGGCGGCAAACGCCGCCTGGCCGA 39824 Query 22968 CCACATCATCCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGC 23027 || | ||||||||| || || ||||| || |||||||| || ||||| ||| | || Sbjct 39825 CCGCCTCATCCCGCTATTCCCACCCCACGAGTGCTACGTCGAAGTCTTCGCCGGCAGCGC 39884 Query 23028 GGCGCTGTACTTCATGCGACCGCCAGCCAGG----GTCGAGGTGATCAACGATATCAACG 23083 || ||| |||| | || || ||| || | || || || ||||||| ||||||| Sbjct 39885 TGCCTTGTTCTTCCTCCGCCC-CCAACCCGCACCTGTTGAAGTCCTCAACGACATCAACG 39943 Query 23084 GCGAGCTGGTGAACCTGTATCGCGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGT 23143 |||| ||||| |||||| |||||||| ||| | || | ||||||||||| || || | Sbjct 39944 GCGACCTGGTATGCCTGTACCGCGTCGTACAGAATCACTTGGAAGAGTTCGTCCGCCAAT 40003 Query 23144 TCAAATGGGCGCTGACGAGCCGGCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCGGAAA 23203 |||| |||||||| | |||||||| |||||||||| ||| || |||||||| Sbjct 40004 TCAAGTGGGCGCTCAGCTCACGGCAGGTATTCGAGTGGCAAAAGATGACCCGCCCGGAAA 40063 Query 23204 CCCTCACCGACATCCAGCGTGCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGC- 23262 |||||||||||||||| |||||||| || |||| |||||| | || | ||| || || Sbjct 40064 CCCTCACCGACATCCAACGTGCGGCCCGATTCTTCTACCT-CCAACACCATGCGTTCGCT 40122 Query 23263 GGGAAGCTTGAAGGGCAGACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTG 23322 | || | || ||||| ||||| |||||||| || ||| |||| | || ||| Sbjct 40123 GCCAAAGTCTCCGGCCAGACCTTCGGTACGGCGACAACAGCGGCGCCG---ATCAATCTG 40179 Query 23323 CTGCGCATCGAAGAAGAGCTATCGGCGGC---GCACATTCGTCTCGC--GAATGCGTACA 23377 | || ||||| || | || || || || ||| || || || ||| | ||| Sbjct 40180 TTACGGATCGAGGAGAACCTTTCCGCCGCATGGCA---GCGGCTGGCCGGAA--CCTACG 40234 Query 23378 TCGAGCGGCT-CGATTGGGCGACCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTC 23436 | || || | || | ||| |||| || | || ||||| ||||| || || | | Sbjct 40235 TGGAAAACCTGCCATGGCTCGA-CTGCGTCCAACGCTACGACCGGCCACATACCTTTCAC 40293 Query 23437 TACCTTGATCCGCCGTACTTCGAGACTGAAGGGTACGGCGTCG-CATTCCCTTTCACGGA 23495 ||| | || || ||||||| || | ||| ||||| |||| |||||||| | | Sbjct 40294 TACATGGACCCACCGTACTGGAAGGTCGCAGGCTACGGTGTCGATTTTCCCTTTGA-TCA 40352 Query 23496 GTACGAGAAGATGGCCGAGCGGCTGCGGTCGATCAAGGGGCGCGCGATCGTCAGCCTCAA 23555 |||||| |||||||||| |||| | | ||||| | | ||| ||||| |||| Sbjct 40353 ATACGAGCAGATGGCCGAATTCATGCGCCAGTGCGAGGGGAGGGTGATGGTCAGTATCAA 40412 Query 23556 CGACCATCCGGAGATCCGGCGCGTGTTCGCCGGTTTCCATATCGAGA 23602 |||||| ||||| |||||||| || || | ||||| || | |||| Sbjct 40413 CGACCACCCGGATATCCGGCGGGTATTTGATGGTTTTCACTTTGAGA 40459 Score = 87.8 bits (96), Expect = 6e-13 Identities = 393/610 (64%), Gaps = 17/610 (3%) Strand=Plus/Plus Query 17566 AATGGCAACATCACAGGCTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGG 17625 || ||||| |||| ||||||||| ||||||| ||| | || | | ||||||||| Sbjct 33280 AACGGCAATATCAACGGCTATCGCATCGACTACGCGGTGGATATCGCCACCGACGGCGGC 33339 Query 17626 TCGTATACGCAGGTGCTGGCCGGTGCGTTCGACG---GCAAGACGACGTCGCTCTACGAG 17682 | ||| || ||||||| ||| | |||| || |||| | || | |||||| Sbjct 33340 GCTTATTTGCCGGTGCTGACCGCT---TTCGTCGCACGCAAAAACACCACCAAATACGAG 33396 Query 17683 CGCTCGCATCGGATCGAGCTGCCGCGCGCGAAAAACGGCTGGCTGATCCGTGTGCGCCGT 17742 ||||| ||||| | || | || || || || ||| | || || ||| | Sbjct 33397 CGCTCTCATCGCCTGGAATTACCCGTCGG---AAGCGAGTGGACCCTGCGCGTTCGCAGG 33453 Query 17743 ATCACGCCGAACGCGCACACGGCGAC-GATCGCCGACGCGATCAACATCGAAGCGATCAC 17801 | || || ||| ||| | | | |||||||||| ||| | |||| ||||||| Sbjct 33454 CTGACTCCCAACCAAAACA-GCAGCCTGATCGCCGACATGATGCGCGTCGAGTCGATCAC 33512 Query 17802 CGAAATCATCGAT-CGGAAGCTTCGCTATCCGATGACGGCGCTCGTCGGCATGACGTTCG 17860 |||||||||||| | ||| || ||| || | || || | | || || |||| Sbjct 33513 CGAAATCATCGACGCCGAA-CTGACCTACCCCCTCACCGCCGTGGGTGGTATCGAATTCG 33571 Query 17861 ACGCACGTTCG-TTCTCGAGCGTGCCGGTGCGTTCGTATCACGTGCGAGGGATGATCTTC 17919 |||| || | ||| | |||||| | ||| | |||| || ||| | Sbjct 33572 ACGC-CGAGCAATTCAACAACGTGCCCAAACTCTCGGCGCTGATGCGCGGCCGCATCCTG 33630 Query 17920 CGTGTTCCGACAAATTACGATCCGGAGACCCGCACGTAT-TCGGGCACTTGGGATGGCAC 17978 || || || | || |||||||| || |||| || ||| ||||| || |||| ||||| Sbjct 33631 CGCGTGCCCAGCAACTACGATCCCGAAACCCATACCTATGTCGGGATCT-GGGACGGCAC 33689 Query 17979 GTTCAAGGCAGCATGGACGAACAATCCAGCTTGGGTCTACTACGGCCTACTGCTCGACAA 18038 || ||| || | | ||||| || || ||||||| |||| ||| ||| || Sbjct 33690 TTTTAAGCTCGCCTACAGCAACAACCCTGCCTGGGTCTGGTACGACCTGGCGCTGCACCC 33749 Query 18039 GCTCAACGGATTGGGCGACCGTGTCGATGCGTCGATGGTCGACAAGTGGGCGCTGTACGC 18098 |||| | ||||| || || | ||| |||||||| || | || |||||| Sbjct 33750 CTATTACGGCCTCGGCGAGCGGCTCAACGCGGCGATGGTCAACCGCTACGCCCTGTACCG 33809 Query 18099 AATCGCGCGTCACTGTGACGAGCTGGTATCGGACGGGAAGGGCGGCAAGGAGCCGCGCTT 18158 ||||| | || ||| | |||| ||||||| |||||||| | ||||||||||| Sbjct 33810 CATCGCCCAGTGGTGCGACCAAATGGTCCCGGACGGCAAGGGCGGTACCGAGCCGCGCTT 33869 Query 18159 TACGTGCAAC 18168 || |||||| Sbjct 33870 CACCTGCAAC 33879 >seq23952 Length=1526 Score = 264 bits (292), Expect = 4e-66 Identities = 703/1062 (66%), Gaps = 24/1062 (2%) Strand=Plus/Plus Query 33519 CGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCG 33578 |||| || |||| || | |||||| |||||||||||||| ||||||| || |||||| Sbjct 477 CGCCTGTGGATCACCTCGGCCTTGTAGAGGCCGTTGATCGTCTCGGCCAAAGCGTTGTCG 536 Query 33579 TAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTG 33638 ||||| ||||| | | | | || || ||||| ||||| || || || ||||| || Sbjct 537 TAGCTATCGCCGACGTTATCCAGGGATGGTTCGATCCCGGCTTCGGCGAGGCGTTCAGTG 596 Query 33639 TAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCG 33698 || ||| ||||||| ||||||| |||| ||||| || | | | || || Sbjct 597 TACTTGATGGACACGTATTACGACCCCCGGTCGCTGTGATGGATGAGACTGCCCCGCTGA 656 Query 33699 CCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCAT- 33757 |||| |||| | | || || || || || ||||| || || ||| ||| ||| Sbjct 657 GCCGGCCGGCGATCATGGAGAGCCTGCTCCAGGGCATCGAGGACGAAG---CTGG-CATG 712 Query 33758 CGACG---AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGC 33814 || || ||| ||||||| || || || || | |||| | ||| || ||||| || Sbjct 713 CGCCGTTCTGCTCGCCCGCCACCCCACGATCCGCCTGGCGTAGGTGTCTATGACGAAGGC 772 Query 33815 CACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATT 33874 ||||| | |||| ||| || | ||| || || |||||||||||||| ||| || Sbjct 773 GACGTAGACGAAGCCCGCCCAGGTTGCGACGTAGGTGAAATCCGACACCCACAGCATGTT 832 Query 33875 CGGTCGGT-CAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACAT 33933 ||| || | || | || |||||||| | |||||||||| ||||| | | | Sbjct 833 CGG-CGCTGGCGCGTAAAAACTTCGGTTGACATGATCCAGCGGGCAAGGCGCTGCCTTGT 891 Query 33934 CGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAGCCCTGCAGCTTCA 33993 || | |||||||||||||| |||| || || | |||| | | ||| | || Sbjct 892 CGCTCATCGTCGTGCGAACCGGCTTGCCCCGGATCACGCCCTGTAGACCCATATCCCGCA 951 Query 33994 TCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGA 34053 ||| ||| ||| |||||||| || |||| | ||| || || |||||||| ||||| Sbjct 952 TCAGCCGCTCGATGGTGCAGCGGGCGACCGGGAAGCCCTCGCGCATCATCTGCCGCCAGA 1011 Query 34054 CCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTG--ATCTCCGGTTG 34111 |||| | |||||||||||| | ||| | | | |||||| | | ||| || | Sbjct 1012 CCTTGCGGACGCCGTAGACCGCGAAGTT--CTCGGCGAACACGCGAGCCACCTCGGGCTT 1069 Query 34112 CAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTGTGCTGC 34171 | || || ||| || | || || || | | | |||| | | || || | Sbjct 1070 GAGAACCTGATCCCGCTGTGCCCGCGCCGACAGGCGCATTGGATTTTGCCGCTGCGCGAC 1129 Query 34172 ATGGCGTCG--GTAGCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCG 34229 | | ||| || ||| ||||| ||| ||||||| |||||||||||||||||| Sbjct 1130 ACG--CTCGAAATACGTCGATGGGGCGATCGGCAAGACGCGGCAGATCGGCTCGACCCCA 1187 Query 34230 AAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCG 34289 ||| | || || | || |||||||| ||| | ||| ||||||||||||||| Sbjct 1188 TAGGCTTTACGGTGATCGTCGATGAAGGCGATCATCGCCGGAACGGGCGGTCGAGCTCCG 1247 Query 34290 CCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGA 34349 |||| || ||| | ||| ||| ||| || ||||||| | | ||||| || || Sbjct 1248 CCTGGGCAAAATATGCGGATGCCTTGCGGAGGATTTCGTTGGCCTGTCGCAGCTCGCGGA 1307 Query 34350 CCTCGCGCTCCAAGGCTTTGA---TGCGTTCACGCTCGGCCGTACTCACGCCATCGCGCT 34406 | ||||| |||| || || | || || |||| || | |||||| |||||| Sbjct 1308 CTTCGCGTTCCAGCGCCTTCATCTTGTCGGCAACTTCGGTCG---TGACGCCAGCGCGCT 1364 Query 34407 CTCCACGGTCGACCTCGTTGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGA 34466 || | || ||||| ||| ||||| || |||||||||||| |||||||| Sbjct 1365 TGCCGCTGTTCACCTCCGCCTTCTTTACCCACTCATGCAGCGTCTGCGGAACGCAGCCGA 1424 Query 34467 TCATCGGCGCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGC 34526 | || ||||| || | || || ||||| ||| ||||| |||| || || Sbjct 1425 TTTTCTCGGCAATGGAAACTACCGCTGCCCATCGCGATGGGTGATCGCGCTCGTGATCCA 1484 Query 34527 GTACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAACT 34568 | |||| || || || ||||| ||||| || || | ||||| Sbjct 1485 GCACCATCCGTACCGCTCGCTCGCGGACCTCAGGCGCAAACT 1526 >seq75625 Length=8981 Score = 141 bits (156), Expect = 3e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43826 CGGTCTGAAGGTCAAAGATCTGATGGGCCAGCCGTGGCGTCTTGCGTTTGCATTGCAGGA 43885 ||| || ||| || || ||||| ||| |||||||| | || || || |||||| Sbjct 8738 CGGCCTCAAGCCGAAGGACCTGATCGGCATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGC 8679 Query 43886 TGCCGGCTGGTATCTCCGACAGGACATCATCTGGCACAAGCCGAACCCGATGCCCGAGAG 43945 | |||||||| || || ||||||||||||||| ||||| ||||||||||| ||||| Sbjct 8678 AGACGGCTGGTGGCTGCGCCAGGACATCATCTGGTCGAAGCCCAACCCGATGCCGGAGAG 8619 Query 43946 CGTGCGCGACCGCTGCACTAAGGCACACGAATATCTGTTTCTGCTTTCGAAGAGCGAGCG 44005 | | ||||| ||||| ||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 8618 CATCGAGGACCGTTGCACGAAGGCGCACGAGTACCTGTTCCTGCTCTCGAAGAGCGAGCG 8559 Query 44006 CTACTACTACGAC 44018 ||| || |||| Sbjct 8558 GTACCGCTTCGAC 8546 >seq43093 Length=2766 Score = 120 bits (132), Expect = 1e-22 Identities = 230/332 (69%), Gaps = 13/332 (4%) Strand=Plus/Minus Query 34275 GGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCC 34334 ||||||||||||||||||| || ||| |||| |||| ||||| |||||||||| | Sbjct 2766 GGCGGTCGAGCTCCGCCTGGGCAAAATACGCCGACGCCTTCTTGAGGATCTCGTTGGCCT 2707 Query 34335 GGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCCGTACTCA 34394 | || || || | ||| ||||||| ||| ||||| || || | |||| |||| | Sbjct 2706 GCCGGAGCTCGCGGCTCTCCCGCTCCAGGGCCTTGATCCGCTCGCCCTCGTCCGTGGT-- 2649 Query 34395 CGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTT----AACCCAATCCAACAGCGTC 34450 || | | | | || | |||| |||| | |||| |||||| | ||||||| Sbjct 2648 CGGCCTTGTACCCTTGCC--TCGATCTCGCTCGGCTTGGCGAACCCACTTGCGCAGCGTC 2591 Query 34451 TGCGGC-GTGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGCCCACATCG-ACGGGT 34508 | || | | ||| |||||| | | ||| ||||| | || || ||||| || || || Sbjct 2590 T-CGCCAGAGCAACCGATCTTGGCCGCGATCGACTGGATCGCGGCCCATTGCGAACCCGT 2532 Query 34509 GCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAACT 34568 ||||||| ||||| || |||| || ||||| ||||| || || || |||||||| Sbjct 2531 GCTCGCTCTCATGCTCCCGGGCCAGCCGGACTGCCCGCTCGCGAACCTCAGGGGAAAAGG 2472 Query 34569 GCTTGGCTT--CTGTTCATGGCTCCATTCTCT 34598 | ||| | | ||||||||||| ||||| Sbjct 2471 GTGGGGCATGCTTCGTCATGGCTCCAGTCTCT 2440 >seq60391 Length=4507 Score = 100 bits (110), Expect = 1e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 31340 CCACTCGCCCCATTGCTTGAATAGGAACGGCACGCCGGCGGCTGCGCACTGGTCGCGCAG 31399 |||||| |||||||||||||| | ||| | |||||| |||||||||||||| |||| Sbjct 4100 CCACTCCCCCCATTGCTTGAAGAAGAAGGCCACGCCCTGTGCTGCGCACTGGTCACGCAT 4159 Query 31400 CGAGCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGAT 31459 || || |||| |||| | || |||||||||| | ||||| ||||||||| |||| Sbjct 4160 AGACCGCACCCACGCGGGGTTCAGTGGGCGGGCGCGCGGCCCGCTCTCGCCGCCGACGAT 4219 Query 31460 CAC 31462 ||| Sbjct 4220 CAC 4222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170403506916520