Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq109206 147 3e-30 seq128333 86.0 8e-12 >seq109206 Length=27697 Score = 147 bits (162), Expect = 3e-30 Identities = 401/610 (66%), Gaps = 8/610 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| |||||||||||||| | || || |||| || || |||||||| ||||| Sbjct 8005 CAAACACGCGAAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGT 8064 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| || ||||| | || || || || ||||||||||| | ||| |||||| || Sbjct 8065 GAGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAA 8124 Query 33698 GAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGCTGT 33753 |||||| || || || ||| || || || || | | ||| | | | | | || || Sbjct 8125 GAAGATCCCCTCGAC-GCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGT 8183 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | |||||| | ||||| | |||||||| |||||||| || || || |||| Sbjct 8184 C---GATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGG 8240 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | |||||| ||| || ||| ||||||| ||||| || | ||| ||||| | Sbjct 8241 CGTGAAAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGT 8300 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || ||||| || || || || ||||| || || || || | ||||| | Sbjct 8301 ACATCTCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCG 8360 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | || | || | || | | | || | ||| || || || || || || Sbjct 8361 CGACTTGAATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGG 8420 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | ||||| || || | ||||| || || | || || || || || | || | || Sbjct 8421 CGGCAAAGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCCC 8480 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | | | |||| || | |||||| || ||| | ||||| || || ||||| |||| Sbjct 8481 ATTGGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCT 8540 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | ||| || || | || || || ||||| ||| || |||| || | Sbjct 8541 TCTTGTACATCTCCCAAATCTCCGGGTACTGAATCGGGAACATACAGAACCTATCGGGGT 8600 Query 34174 TTGGTGCAAG 34183 | || || || Sbjct 8601 TGGGAGCGAG 8610 >seq128333 Length=65618 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| || ||||| | || | ||| |||| ||| |||||| | ||| |||| ||| || Sbjct 22602 TCCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACTCGTACCATAGGAACAATGCC 22661 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 |||||| | ||||| || || ||||| | || | |||||||| || || ||| Sbjct 22662 ATTTGATGTTCCATTTGTCCCACGAATATAACTCCCCGTAGCACGAATGTTGTGAACTGA 22721 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| ||| | || || ||| || || || || || Sbjct 22722 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCGTATAT 22781 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 |||||| ||||||||||| ||||| Sbjct 22782 GCCTTCAATGCTATCATCTTTCATG 22806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628774653545280