Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq109654 96.9 3e-15 seq109206 82.4 8e-11 >seq109654 Length=28343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || | ||| ||||||||||| ||| Sbjct 18224 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCGAGCTGTTTTCCA 18283 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || || || || ||||| |||||| || Sbjct 18284 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTG 18343 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | ||| ||||||| ||| | ||||| ||||| | ||| Sbjct 18344 ACGTTGTCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGGGTT 18403 Query 139748 TTTACGAATATTTGCATA 139765 || || ||||| |||||| Sbjct 18404 TTCACAAATATCTGCATA 18421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || || || |||||| || || || ||||||||||| Sbjct 19130 TGAAGAGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTTCTGCCATCTTCGAGCTGC 19189 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| || | ||||| || ||||| || || || ||||| ||| | || Sbjct 19190 TTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCCTCCTTGTC-TTGAATCTT 19248 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | || | ||||||| | ||| ||||| | || | ||||| ||||| Sbjct 19249 GGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTACCGGT 19308 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | ||||| ||||| || |||||| Sbjct 19309 TAGGGTTTTGACGAAGATCTGCATA 19333 >seq109206 Length=27697 Score = 82.4 bits (90), Expect = 8e-11 Identities = 342/523 (65%), Gaps = 20/523 (4%) Strand=Plus/Minus Query 52550 TTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA 52609 |||| |||||| ||| |||| | | ||||| ||| |||||||| || | || Sbjct 8228 TTCCTTGTGTGGCCAAGAAGGCTCAGTGGGCCATGAGGTGGATCGA---CGGCTCAGAAT 8172 Query 52610 CTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTT 52669 |||| || || || || ||||||| || || || || | || || || || || | Sbjct 8171 CTTTCGCGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCT 8112 Query 52670 T-TGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 | |||| | ||||||| | || || | ||| | ||||| || |||||||| || Sbjct 8111 TCTGCG-CGATATTTTGGCTAAAGAAACGCGGGT-TGATGCCGGGTCTCACGTTCTCTAA 8054 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATAC 52787 ||||||||||||||| || ||||| | ||| ||||| ||||||||| | ||| Sbjct 8053 CGAGTTGATATCGCGAGATGAAGGGTTACACTGCGATTTCGCGTGTTTGCTT-----TAC 7999 Query 52788 GCGCGT-TAAAGAA-AAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTC 52845 ||| | | ||||| || || | || | | | || | || ||||| Sbjct 7998 ACGCTTCTGAAGAAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTT 7939 Query 52846 GACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GC 52904 || || || | ||||| | || ||| | || | ||| |||| |||||| | Sbjct 7938 GATATCGAGAGGGAGTTCGTCTGTGATGCTCTGCCTTGTGCGTTGGTGGGTATGAACGGT 7879 Query 52905 GACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGTC 52963 || | | |||||| |||| |||||||| || || || || || | ||||| | | ||| Sbjct 7878 GATC-TTATGTGCAAGTATATCGAGTTCGTGGCTGATCGATTGATGGATGC-GTTGGGTT 7821 Query 52964 A-GCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAG 53022 | ||| | || ||| ||||| | ||||||||| | ||| | |||||| | || Sbjct 7820 ACGCCAAGAT-CTACAATGCCCAGAACCCCTTTGATTGGATGGAGCTGATATCGTTGCAG 7762 Query 53023 GGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 || || || ||||| || |||| | || || |||||| ||| Sbjct 7761 GGTAAGACCAACTTCTTTGAGAAGAGGGTTGGAGAGTACCAAA 7719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495242542819200