Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq109206 141 1e-28 >seq109206 Length=27697 Score = 141 bits (156), Expect = 1e-28 Identities = 397/607 (65%), Gaps = 2/607 (0%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| |||||||||||||| | || ||||||| || || ||||| || ||||| Sbjct 8005 CAAACACGCGAAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGT 8064 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 ||| || ||||| | || || || || ||||||||||| | |||| || ||| || | Sbjct 8065 GAGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 8123 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239 ||||||| || || || || || || || | | ||| | || | | | | Sbjct 8124 AGAAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGT 8183 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 |||||| | ||||| | |||||||| |||||||| || || || ||||| | Sbjct 8184 CGATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGT 8243 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 |||||| ||| || ||| ||||||| || || || | ||| ||||| |||| Sbjct 8244 GAAAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACA 8303 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || ||||| || || || || ||||| || || || || | ||||| | | Sbjct 8304 TCTCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGA 8363 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 | || | || | || | | | || | ||| || || || ||||| ||| | Sbjct 8364 CTTGAATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGG 8423 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 |||| || || | ||||| || || | || || || || || | || | ||| | Sbjct 8424 CAAAGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCCCATT 8483 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | | |||| || | ||| || || || ||||||| || || || || ||||| | Sbjct 8484 GGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTTCT 8543 Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTG 42659 | ||||| | ||| || || | || ||||| ||||| ||| || |||| || || | Sbjct 8544 TGTACATCTCCCAAATCTCCGGGTACTGAATCGGGAACATACAGAACCTATCGGGGTTGG 8603 Query 42660 GTGCAAG 42666 | || || Sbjct 8604 GAGCGAG 8610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670027827041760