Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq109206 141 1e-28
>seq109206
Length=27697
Score = 141 bits (156), Expect = 1e-28
Identities = 397/607 (65%), Gaps = 2/607 (0%)
Strand=Plus/Plus
Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120
|||||| |||||||||||||| | || ||||||| || || ||||| || |||||
Sbjct 8005 CAAACACGCGAAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGT 8064
Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179
||| || ||||| | || || || || ||||||||||| | |||| || ||| || |
Sbjct 8065 GAGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGA 8123
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239
||||||| || || || || || || || | | ||| | || | | | |
Sbjct 8124 AGAAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGT 8183
Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299
|||||| | ||||| | |||||||| |||||||| || || || ||||| |
Sbjct 8184 CGATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGT 8243
Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359
|||||| ||| || ||| ||||||| || || || | ||| ||||| ||||
Sbjct 8244 GAAAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACA 8303
Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419
| || || ||||| || || || || ||||| || || || || | ||||| | |
Sbjct 8304 TCTCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGA 8363
Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479
| || | || | || | | | || | ||| || || || ||||| ||| |
Sbjct 8364 CTTGAATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGG 8423
Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539
|||| || || | ||||| || || | || || || || || | || | ||| |
Sbjct 8424 CAAAGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCCCATT 8483
Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599
| | |||| || | ||| || || || ||||||| || || || || ||||| |
Sbjct 8484 GGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTTCT 8543
Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTG 42659
| ||||| | ||| || || | || ||||| ||||| ||| || |||| || || |
Sbjct 8544 TGTACATCTCCCAAATCTCCGGGTACTGAATCGGGAACATACAGAACCTATCGGGGTTGG 8603
Query 42660 GTGCAAG 42666
| || ||
Sbjct 8604 GAGCGAG 8610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670027827041760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |