Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq109206 163 4e-35 >seq109206 Length=27697 Score = 163 bits (180), Expect = 4e-35 Identities = 567/863 (66%), Gaps = 25/863 (3%) Strand=Plus/Minus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || |||||||| |||||||| ||||| ||||||| || ||||||| || ||||| ||| Sbjct 8562 GAGATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCGGAGGAGGTGGAT 8503 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135 || ||| | ||| | | ||||||| ||||| |||| | || || Sbjct 8502 CTCTCCCAAGACAATACCCAATGGGAGAACA---TGACTCCCGATGAGAAGCACTTCATT 8446 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 || || || | || |||||||||| ||| || || ||||| || ||||| | Sbjct 8445 TCCCATGTTCTTGCTTTCTTTGCCGCCTCAGACGGCATCGTTTTGGAGAATCTCGCCGGA 8386 Query 125196 CGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGC-TTTTACGGATTCCAAATCA 125253 | ||| | ||| | | | || | |||| | ||||| ||||| || ||||| ||| Sbjct 8385 AGGTTCATGAAGGAGATT-CAAGTCGCGGAGGCG-CGTGCCTTTTATGGGTTCCAGATCG 8328 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 || ||||| | ||||| || |||||| | || | || | |||||| || | Sbjct 8327 CTATCGAGAATATTCACTCTGAGATGTACAGTCTCTTGTTGGAGACTTACATTAAAGACC 8268 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || || || |||||| |||| ||||| || | || | | | || |||| Sbjct 8267 CGGCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCCTTGTGTGGCCAAGAAGG 8208 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 |||| |||| || |||||||||| | | | |||| ||| || | || | | Sbjct 8207 CTCAGTGGGCCATGAGGTGGATCGACGGCTCAGAATCTTT---CGCGGAGCGGTTGATCG 8151 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTC 125492 | |||||| ||| ||||| |||||||| || || || || |||| | || |||||||| Sbjct 8150 CGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCG-CGATATTTTGGCTA 8092 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| ||||| | ||||| || || ||| | ||||||||| ||||| ||||| || Sbjct 8091 AAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCGCGAGATGAA 8032 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612 || ||||||| || || || | | || || | | || |||| || | || Sbjct 8031 GGGTTACACTGCGATTTCGCGTGTTTGCT-TTACACG-CT-TCTGAA----GAA-GAAGC 7980 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 | ||||| || |||| || | ||||||||| || || ||||| Sbjct 7979 TG-AGCGAGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTTGATATCGAGAGGGAGTTC 7921 Query 125673 CTAACCGAATCCCTACCGGTCAGCAT-GATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 | || | || || | || | | | || |||||| | | || |||||| |||| Sbjct 7920 GTCTGTGATGCTCTGCCT-TGTGCGTTGGTGGGTATGAACGGTGATCTTATGTGCAAGTA 7862 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGC 125791 || ||||| ||||| ||||| | || | | |||| | | |||||| ||||| || Sbjct 7861 TATCGAGTTCGTGGCTGATCGATTGATGGATGCGTTGGGTTACGCCAAGATCTACAATGC 7802 Query 125792 CAAGAATCCCTTTGATTTCATG-ACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 | |||| |||||||||| ||| | | | ||||| | |||||||||||||||| || | Sbjct 7801 CCAGAACCCCTTTGATTGGATGGAGCTG-ATATCGTTGCAGGGTAAGACCAACTTCTTTG 7743 Query 125851 AGAAGAAGGTCAGCGAGTACAAA 125873 |||||| ||| | |||||| || Sbjct 7742 AGAAGAGGGTTGGAGAGTACCAA 7720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739832043017760