Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq54035 123 4e-23 seq99290 98.7 2e-15 seq71655 86.0 1e-11 >seq54035 Length=3457 Score = 123 bits (136), Expect = 4e-23 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 271738 ATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTA 271797 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 ATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTA 1645 Query 271798 CCGACTGAGCTATCACGGAAT 271818 || ||||||||||| |||||| Sbjct 1644 CCAACTGAGCTATCGCGGAAT 1624 >seq99290 Length=20010 Score = 98.7 bits (108), Expect = 2e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 ||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| Sbjct 19688 TATATGGTGGGCCCACACGGACTTGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCT 19747 Query 272928 AACCAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||||| Sbjct 19748 GACCAACTGAGCTATAGGCCCT 19769 >seq71655 Length=7478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 271738 ATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCT 271794 || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 6116 ATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCACTTGCT 6172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895455510882240