Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq86116 120 2e-22 seq115941 111 1e-19 seq113932 84.2 2e-11 seq106905 84.2 2e-11 seq97232 84.2 2e-11 seq86460 84.2 2e-11 seq109654 82.4 6e-11 >seq86116 Length=13258 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| ||||| || |||||||||||| ||| | | |||| || Sbjct 3409 ACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGAGTACGGCCGTCCTCA 3468 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | ||||| | || ||||| ||| || ||||| ||||| | Sbjct 3469 AGCTGCTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGA 3528 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || || || ||| |||| || || ||||| |||||||| Sbjct 3529 ATCTTGGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGACCTCCAAGGTGATGGTTTTT 3588 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 3589 CCAGTAAGGGTTTTGACAAAGATTTGCAT 3617 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| ||||| || ||||| |||||| || | | | || || Sbjct 3180 AACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTCCGGCCATCCTC 3239 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || |||||| | ||||| | || ||||| ||||| || || ||||| Sbjct 3240 GAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 3299 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || |||||||| |||| || || | ||| |||||||| Sbjct 3300 AATCTTGGCCTTGACATTGTCAATGGTATCTGAGCTTTCCACCTCAAGGGTGATGGTTTT 3359 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || ||||||||||||||| Sbjct 3360 CCCGGTGAGTGTCTTAACAAAAATTTGCATA 3390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/237 (69%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||||| ||||| || ||||||||||| || | | | ||||| Sbjct 3637 ACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCTTCA 3696 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | |||| | ||| ||||| || || || || ||||| Sbjct 3697 AGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGG 3756 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| ||| |||| || || | ||| || ||||| Sbjct 3757 ATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTT 3816 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT-------GAAAATAAAATTTTAAT 15384 || || |||||||| ||||| || ||||| | | ||||| || |||||||| Sbjct 3817 CCGGTAAGAGTTTTCACAAAGATCTGCATCTGTGTGGGCAGAAAACAAGATTTTAAT 3873 >seq115941 Length=36387 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | | || | |||||||| || || || || ||||||||||| Sbjct 4664 TGCCACCCCTCAGACGCAGCACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCG 4723 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || ||||| || ||||| | ||||| | |||||||| | Sbjct 4724 CAAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGG 4783 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| || ||||| |||||| ||||||| | || || ||||| | || | Sbjct 4784 GAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCAGAGCTCTCGA 4843 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| |||||||| || || || || || |||||||||||||| Sbjct 4844 CCTCGAGGGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATTTGCAT 4892 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || || || ||||||||||| ||| ||||| | || || Sbjct 5139 AACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCGAGAGTTCTCCCATCCTC 5198 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || |||||| | || | || || ||||| || || || || ||||| Sbjct 5199 AAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 5258 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| || ||| | || ||||| || | || || || || || |||||||| Sbjct 5259 AATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAAGTTATGGTTTT 5318 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||| ||||||||| Sbjct 5319 TCCAGTGAGGGTTTTGACAAAGATTTGCATA 5349 >seq113932 Length=32622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || ||||||||||| ||| ||| |||| || Sbjct 27622 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTCG 27563 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | || | ||| || ||||| ||| || || || ||||| Sbjct 27562 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 27503 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| ||| | || || |||| ||| ||||||||| Sbjct 27502 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTA 27443 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || ||||| Sbjct 27442 CCCGTTAGGGTTTTCACGAAGATCTGCAT 27414 >seq106905 Length=25706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || ||||||||||| ||| ||| |||| || Sbjct 9532 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTCG 9473 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | || | ||| || ||||| ||| || || || ||||| Sbjct 9472 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 9413 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| ||| | || || |||| ||| ||||||||| Sbjct 9412 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTA 9353 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || ||||| Sbjct 9352 CCCGTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || ||||||||||| ||| ||| |||| || Sbjct 12306 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTCG 12365 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | || | ||| || ||||| ||| || || || ||||| Sbjct 12366 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 12425 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| ||| | || || |||| ||| ||||||||| Sbjct 12426 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTA 12485 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || ||||| Sbjct 12486 CCCGTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || ||||||||||| ||| ||| |||| || Sbjct 12068 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTCG 12009 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | || | ||| || ||||| ||| || || || ||||| Sbjct 12008 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 11949 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| ||| | || || |||| ||| ||||||||| Sbjct 11948 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTTA 11889 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || ||||| Sbjct 11888 CCCGTTAGGGTTTTCACGAAGATCTGCAT 11860 >seq109654 Length=28343 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || ||||||||||| ||| | | |||| || ||||| Sbjct 17762 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCGTCCTCCAATTGC 17821 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | ||| || ||||| ||| || ||||| ||||| ||||| Sbjct 17822 TTCCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGGATTTTA 17881 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || || || || | || || || || || |||||||| || || Sbjct 17882 GCCTTTACATTATCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTA 17941 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 17942 AGGGTCTTCACGAAGATTTGCAT 17964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361594443119916