Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq26725 260 3e-65 seq27069 87.8 5e-13 seq24404 82.4 2e-11 >seq26725 Length=1775 Score = 260 bits (288), Expect = 3e-65 Identities = 542/795 (68%), Gaps = 14/795 (2%) Strand=Plus/Minus Query 1180 TTCGACGAAGCATCCAACATTGCC-GATCTGGTGTGGGAAGTAGCAGAAGGCGCGCTGAC 1238 |||||||||||||| | | |||| || | | |||||||| || || || | ||||| Sbjct 1155 TTCGACGAAGCATC-AGCGGTGCCCGACAAGATTTGGGAAGTGGCCGAGGGTGGCCTGAC 1097 Query 1239 GGACGAAGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCGACGCGTAACACCGGGCG 1298 |||| || ||| ||||| | | ||||| ||||| || || | |||||| || Sbjct 1096 TGACGGCGAG-CCGT-----TCTGGTTCGTCTTCGGCAACCCCACCCGGACCACCGGCCG 1043 Query 1299 TTTCCGTGAATGTTTCCGCAAGTACAAACACCGCTGGAAGTGCGCGCAGATTGACAGCCG 1358 |||||||| || | ||||||| | || ||||||||| | ||||| |||||||| Sbjct 1042 CTTCCGTGAGTGCTGGCGCAAGTTCCGCCATCGCTGGAAGACCCGTCAGATCGACAGCCG 983 Query 1359 CACCGTTGAAGGC-ACTAACAAGCAGCAGTTGCAGAAGTGGGTAGACGACTACGGCGAGG 1417 | | | ||| || |||||| | | | | || |||||| | |||||||||||| | Sbjct 982 C-CAGGCCAAGATGACGAACAAGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGAAG 924 Query 1418 AAAGCGACTTTGTTAAAGTTCGTGTGCGCGGAATATTCCCTGATGCGTCTGAATTGCAGT 1477 | |||||| | || ||||| ||||| || | ||||| ||||||||| |||||| Sbjct 923 AGTCCGACTTCTTCAAGGTTCGCGTGCGTGGCCTGTTCCCGTCTGCGTCTGACCTGCAGT 864 Query 1478 TCATCCCGACAGGCCTCACTGACGAGGCAATGAAGCGCGTTGTTACCGCGGCGCAGGT-A 1536 ||||| | | || ||||||| | ||| | ||| || |||| ||| ||| | Sbjct 863 TCATCGGTAGCGATCTGACTGACGCCGGCATGGATCGCACGGTGACCGAGGCCATGGTCA 804 Query 1537 GCGCATGCACCAGTGATTATCGGCGTCGACCCGGCATATTCCGGCGTGGATGATGCGGTT 1596 || ||||| ||| | || |||||||| || || | | ||||| | |||||| | Sbjct 803 GC-CATGCGCCAATCATCATCGGCGTGGATCCATCCTGGTCCGGTGAGGATGAGTTCGCG 745 Query 1597 ATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCTCTGGACCGGCAACAAGACCACCGAT 1656 || |||||||| ||||| ||||||||||| || || | ||| | |||| | ||| Sbjct 744 ATCTACCTGCGCCAGGGCCTGCACAGCAAGCTGATCGGCACCTATCAGAAGAGCGACGAC 685 Query 1657 GATTTGATTATGGCGAAGCGCATCGCCGACTTTGAAGACCAGTACCAGGCTGATGCAGTA 1716 || || | ||||| || ||| | | | || ||||||||| ||||||| || || Sbjct 684 GACGTGCTCATGGCCGGTCGGATCTCGCAGCTGGAGGACCAGTACAAGGCTGACGCTGTG 625 Query 1717 TTTATCGACTTCGGTTACGGTACCGGGCTGAAGTCAATCGG-TGACGGATGGGGCAGGAC 1775 || ||||||| || ||||| ||||| | || ||| || ||||||| || Sbjct 624 TTCGTCGACTTTGGCTACGGCACCGGCATCGTATCGGCCGGCCGAGCGATGGGG-AGACA 566 Query 1776 GTGGCAGTTAATCCCGTTCGGCGGCGGCTCGACAGACCCTCAGATGCTCAACAAGCGCGG 1835 |||| | | ||| |||||| || | || || || || ||||| ||||||||||| Sbjct 565 GTGGACGCTGGTCCAGTTCGGTGGTGCTTCAACCGATCCGGCCATGCTGAACAAGCGCGG 506 Query 1836 CGAGATGTTCAACAGCTGCAAAACATGGCTGAAGCTCGGCGGCGCGCTGGATGATCAGGA 1895 |||||| | ||| | || |||||| ||| ||||| | |||| | || | | | Sbjct 505 CGAGATCTGGAACGCCATGAAGGAATGGCTCAAGGCTGGCGGTGAGCTGAACGACCGGCA 446 Query 1896 GACGGCTGATGACCTGTCGGCGGCAGAGTACAAAGTCAGGGTTGACGGCAAGATCGTCAT 1955 ||| |||||||| | | || | |||||||| ||| | | |||||||||||||| | Sbjct 445 GACCGCTGATGAGATCTGCGCCCCTGAGTACAAGGTCCGCCTGGACGGCAAGATCGTGCT 386 Query 1956 TGAGCCGAAGGAGGA 1970 || | ||||| || Sbjct 385 GGAAGCCAAGGATGA 371 >seq27069 Length=1825 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 4419 AAGGAAGAGAAACTGCTGATGCTTGGCCCGGTGCTTGAGCGCCTGAATGACGAAGCGCTT 4478 ||||||||||| |||||||||||||||| ||||| |||||| | || ||||| ||| Sbjct 1310 AAGGAAGAGAAGATGCTGATGCTTGGCCCTGTGCTGGAGCGCATCAACGACGAGCTGCTG 1251 Query 4479 AACCCGCTTATCGATCGCGTGTTCTCAATCATG 4511 ||||||| ||||| ||||| ||| |||||| Sbjct 1250 GACCCGCTGATCGACCGCGTCTTCAACATCATG 1218 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 5479 GGCGCGCCGGAGAAATACGAGTTCAAACCAGCTGAAGGCCAGGAACTTGATACTGCCGCT 5538 |||||||| ||||| |||||||||| | |||||| | | |||| |||||| Sbjct 343 GGCGCGCCCGAGAAGTACGAGTTCAGCTTGCCGGAAGGCTACCAGGCTGATTCTGCCGTC 284 Query 5539 CTGGAGCAGTTCGAGCCTATCGCCCGCGAACTGAACCTGACCAATGAGCAGGCGCAGAAG 5598 |||| | ||| || |||||||| ||||||||||||||| | |||||||| ||||| Sbjct 283 ATGGACAAATTCCAGGGCATCGCCCGGGAACTGAACCTGACCCAGGAGCAGGCACAGAAA 224 Query 5599 ATGGTCGATCTGTACG 5614 |||| | ||| ||| Sbjct 223 CTGGTGGCACTGGACG 208 >seq24404 Length=1558 Score = 82.4 bits (90), Expect = 2e-11 Identities = 166/246 (67%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 8816 GCTAAATACCCTGATCGCAAGTGCCGGTTAATCCCGTTCCAGTTCTCGACCGTCCAGACA 8875 || || ||||| || |||||||||||| | ||||||||| ||||| |||| ||||| Sbjct 1255 GCCAAGTACCCGGACCGCAAGTGCCGGCTGATCCCGTTCGAGTTCAGCACCGAGCAGACC 1314 Query 8876 TACGCGCTGGAGTTCGGACATAACTATATGCGCGTTATCAAAGATGGCGCTTATGTTCTG 8935 |||| ||||||||||| || | || || ||| | |||| |||||| || | ||| Sbjct 1315 TACGTCCTGGAGTTCGGTCACCAGTACATCCGCTTCATCACCAATGGCGGCTACCTGCTG 1374 Query 8936 ACGACCAGCAATGTGATTTATGAGCTGGCGATGCCGTATGCTGACACTGACCTTTTCCGC 8995 | | | || | ||| | ||| | | | ||| || | || | ||||| ||| | Sbjct 1375 AACATCGGCCA---GATCTTCGAGATCTCCACGCCCTACGTGGAAGCCGACCTGTTCAAC 1431 Query 8996 ATTAAATTCACGCAGAGCGCCGATGTTCTGACGCTGGTGCATCCTGCATACCCGCCTAAA 9055 | || | ||| ||| ||| || || ||||| | | || |||| ||| | || | Sbjct 1432 CTGAACTACACCCAGTCCGCTGACGTGCTGACCATCGCTCACCCTGGCTACGCACCGCGA 1491 Query 9056 GAACTG 9061 |||||| Sbjct 1492 GAACTG 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126626083990296