Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq115941 93.3 3e-14 seq86116 93.3 3e-14 seq113932 91.5 1e-13 seq109654 91.5 1e-13 seq106905 91.5 1e-13 seq97232 91.5 1e-13 seq86460 91.5 1e-13 seq64237 86.0 5e-12 >seq115941 Length=36387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| ||||| |||||||| || | ||| | | ||||| Sbjct 5140 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCGAGAGTTCTCCCATCCTCA 5199 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | ||||| | |||||| || ||| | |||||| ||||| | Sbjct 5200 AGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 5259 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | | | | || || | || |||| || | || |||||||| Sbjct 5260 ATCTTGGCTTTCACATTGTCAATGGTGTC-CGAGCTCTCCACCTCCAAAGTTATGGTTTT 5318 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||||||||| |||||||| Sbjct 5319 TCCAGTGAGGGTTTTGACAAAGATTTGCAT 5348 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || ||||| || || ||||||||||| | || || | ||||| Sbjct 4683 CACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTGCCATCCTC 4742 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || ||| |||| | ||||| || ||| ||| | ||||| ||||| Sbjct 4743 CAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 4802 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGT 19008 ||||||| ||||| | | | | |||| ||| |||| || |||| ||| ||||| Sbjct 4803 AATTTTCGCCTTTACATTGTCAATTGTAT---CAGAGCTCTCGACCTCGAGGGTGATGGT 4859 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || || | || || ||||||||||||||| Sbjct 4860 TTTTCCCGTAAGGGTCTTCACAAAAATTTGCATT 4893 >seq86116 Length=13258 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||||||||| || |||||||| ||||||| || | | ||||||||||| Sbjct 2502 GTGCAGGGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCATCCTCCAGCTG 2561 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||||| || ||||||| |||||||| || || | |||||| ||||| ||| || Sbjct 2562 CTTACCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTT 2621 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | || || ||| || | |||||| || || || || Sbjct 2622 GGCCTTCACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTCCCAGT 2681 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||||||||||||||| Sbjct 2682 CAAGGTCTTGACAAAAATTTGCAT 2705 >seq113932 Length=32622 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||| | ||| | ||||||| Sbjct 27623 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTC 27564 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 27563 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 27504 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| || ||| || | ||| |||||||| Sbjct 27503 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 27444 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| ||||| || || || ||||| Sbjct 27443 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 27414 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||| | ||| | ||||||| Sbjct 19542 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTC 19483 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 19482 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 19423 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | | || || || ||| || | ||| |||||||| Sbjct 19422 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCAACCTCTAGGGTTATGGTTTT 19363 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| ||||| || || || ||||| Sbjct 19362 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 19333 >seq109654 Length=28343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||||| || | || |||||||| || ||||||||||| ||| Sbjct 19106 CCACCACGGAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCGGCC 19165 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || || ||||| || || || | ||||| |||||||| ||| || Sbjct 19166 AGGGTTCTGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGAGGG 19225 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| || || || | | ||| || ||| ||| Sbjct 19226 ATCCCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 19285 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| || ||||| ||||| |||| |||||||| || || ||||| || Sbjct 19286 TCGAGAGTGATGGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCATATT 19335 >seq106905 Length=25706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||| | ||| | ||||||| Sbjct 9533 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTC 9474 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 9473 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 9414 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| || ||| || | ||| |||||||| Sbjct 9413 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 9354 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| ||||| || || || ||||| Sbjct 9353 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||| | ||| | ||||||| Sbjct 12305 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTC 12364 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 12365 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 12424 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| || ||| || | ||| |||||||| Sbjct 12425 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 12484 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| ||||| || || || ||||| Sbjct 12485 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||| | ||| | ||||||| Sbjct 12069 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTC 12010 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 12009 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 11950 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| || ||| || | ||| |||||||| Sbjct 11949 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 11890 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| ||||| || || || ||||| Sbjct 11889 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 11860 >seq64237 Length=5233 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||| | ||| | ||||||| Sbjct 3107 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCGTCCTC 3166 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 3167 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 3226 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || || || ||| || | ||| |||||||| Sbjct 3227 GATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATGGTTTT 3286 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| ||||| || || || ||||| Sbjct 3287 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 3316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413903450967544