Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq109654 87.8 1e-12 >seq109654 Length=28343 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || |||||||||| | | || | ||| ||||||||||| || Sbjct 17768 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCGTCCTCCAATTGCTTCCCT 17827 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| || | ||| |||||||| | || |||||||| || || | | | ||| Sbjct 17828 GCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGGATTTTAGCC--- 17884 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 ||||| | | ||| ||||| | | || |||| ||| || ||||| |||||||| Sbjct 17885 TTTACATTATCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGG 17944 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || ||||| |||||||| Sbjct 17945 GTCTTCACGAAGATTTGCAT 17964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318262917227448