Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq65908 91.5 2e-13 >seq65908 Length=5621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 6990 CCGGCTT-CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGA 7048 ||| ||| ||| || || |||| || || ||| ||||| ||||||| || || || Sbjct 3501 CCGCCTTGCAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAACCGGCGTGCGGCTGG 3442 Query 7049 ACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATT 7108 ||||| ||| | | | | ||||||||||| ||||| || || ||||| | ||| | Sbjct 3441 ACGTTGGCGTAGTCGGCGCCGAACAGTTCTTTTGCACGGTCGATGGCCAGTTGCTCAACC 3382 Query 7109 TCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTG 7168 | ||| | | |||| || || || || || ||||| || || || || || |||||| Sbjct 3381 ACGTCGACGTACTCGCAACCACCGTAGTAGCGCTTGCCTGGGTAACCTTCGGCGTACTTG 3322 Query 7169 TTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200 ||||| | || ||||| || || | ||| || Sbjct 3321 TTGGTCAGAACCGAACCTTGAGCCTCCATCAC 3290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554443546308960