Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq86116 86.0 5e-12 >seq86116 Length=13258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || || || || || || || ||||| || ||| ||| ||| ||| Sbjct 2949 CAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCGGCCAAGGTTCGTCCATC 3008 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGT 20114 || | || ||||| ||| |||| ||||| || || || | |||| | || || |||| Sbjct 3009 CTCGAGCTGCTTGCCAGCAAAAATGAGCCTTTGCTGGTCAGGCGGG-ATACCCTCCTTGT 3067 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | || || |||||| | | ||| | |||| | ||| ||||| ||||||| Sbjct 3068 CCTGGATCTTAGCTTTCACATTGTCAATTGTATCGGAACTTTCGACTTCCAAAGTAATGG 3127 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| | || || |||||||||||||| Sbjct 3128 TTTTCCCGGTAAGGGTCTTCACAAAAATTTGCAT 3161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418909754961756