Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq109206 95.1 1e-14 seq116532 82.4 7e-11 >seq109206 Length=27697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 362/564 (64%), Gaps = 7/564 (1%) Strand=Plus/Plus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| || ||||| ||||| || |||||||||| ||| | |||||| || || || Sbjct 8005 CAAACACGCGAAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGT 8064 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaa 13265 ||||||||||| | ||| ||||| || | ||||||||| || ||| || || || | Sbjct 8065 GAGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCGC-GCAGAAGCTTCCGGAGA 8123 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA- 13324 | || || || || || || ||||| ||||||| || || | ||| | | Sbjct 8124 AGAAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTC----CGCGAAAGATTCTGAG 8179 Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATT 13384 | || |||||| | ||||||| | || || | || || || | || || Sbjct 8180 CCGTCGATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATG 8239 Query 13385 GCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA 13444 |||| ||| | || || || |||| ||| ||||| || | ||| | || Sbjct 8240 GCGTGAAAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTG 8299 Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504 ||||| || || |||||||| || || || || ||||| |||||||| | ||||| Sbjct 8300 TACATCTCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCC 8359 Query 13505 GATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564 | || |||| || || ||| | || | || || ||| || ||||| Sbjct 8360 GCGACTTGAATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAG 8419 Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAAC 13624 || ||||| |||||||| | || ||| || | || || | | || || | Sbjct 8420 GCGGCAAAGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCC 8479 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || | | | |||| || | ||| |||||||| | ||||| || || || | ||| Sbjct 8480 CATTGGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCC 8539 Query 13685 TTCTTATACATCATCCATATATCC 13708 ||||| |||||| ||| || ||| Sbjct 8540 TTCTTGTACATCTCCCAAATCTCC 8563 >seq116532 Length=35955 Score = 82.4 bits (90), Expect = 7e-11 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| |||||||||||||| | ||||||||||||| || ||||| ||||| ||||| | Sbjct 9718 ACAAGCAAAATCACAGTGGAGTCCTTCATCTCTAGAAATAAGCTCATTTGAGAATGTCAA 9659 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 || ||||| | || | ||||||| ||| ||||| ||| |||| Sbjct 9658 GCCTGGCATTAATCCCCTCTTTTTAAGCCAGAATATTGCA-CAAA 9615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430286556827352