Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq124121 269 9e-68 seq60391 84.2 8e-12 >seq124121 Length=49848 Score = 269 bits (298), Expect = 9e-68 Identities = 493/707 (70%), Gaps = 25/707 (4%) Strand=Plus/Plus Query 22169 GGCTTTCACAATGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGA 22228 ||||| |||| || | | || || || || ||||| |||||||| || || || || || Sbjct 39766 GGCTTGCACA-TGACCACCCCAATCATCCCTTGGATGGGCGGCAAACGCCGCCTGGCCGA 39824 Query 22229 CCACATCATCCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGC 22288 || | ||||||||| || || ||||| || |||||||| || ||||| ||| | || Sbjct 39825 CCGCCTCATCCCGCTATTCCCACCCCACGAGTGCTACGTCGAAGTCTTCGCCGGCAGCGC 39884 Query 22289 GGCGCTGTACTTCATGCGACCGCCAGCCAGG----GTCGAGGTGATCAACGATATCAACG 22344 || ||| |||| | || || ||| || | || || || ||||||| ||||||| Sbjct 39885 TGCCTTGTTCTTCCTCCGCCC-CCAACCCGCACCTGTTGAAGTCCTCAACGACATCAACG 39943 Query 22345 GCGAGCTGGTGAACCTGTATCGCGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGT 22404 |||| ||||| |||||| |||||||| ||| | || | ||||||||||| || || | Sbjct 39944 GCGACCTGGTATGCCTGTACCGCGTCGTACAGAATCACTTGGAAGAGTTCGTCCGCCAAT 40003 Query 22405 TCAAATGGGCGCTGACGAGCCGGCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCGGAAA 22464 |||| |||||||| | |||||||| |||||||||| ||| || |||||||| Sbjct 40004 TCAAGTGGGCGCTCAGCTCACGGCAGGTATTCGAGTGGCAAAAGATGACCCGCCCGGAAA 40063 Query 22465 CCCTCACCGACATCCAGCGTGCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGC- 22523 |||||||||||||||| |||||||| || |||| |||||| | || | ||| || || Sbjct 40064 CCCTCACCGACATCCAACGTGCGGCCCGATTCTTCTACCT-CCAACACCATGCGTTCGCT 40122 Query 22524 GGGAAGCTTGAAGGGCAGACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTG 22583 | || | || ||||| ||||| |||||||| || ||| |||| | || ||| Sbjct 40123 GCCAAAGTCTCCGGCCAGACCTTCGGTACGGCGACAACAGCGGCGCCG---ATCAATCTG 40179 Query 22584 CTGCGCATCGAAGAAGAGCTATCGGCGGC---GCACATTCGTCTCGC--GAATGCGTACA 22638 | || ||||| || | || || || || ||| || || || ||| | ||| Sbjct 40180 TTACGGATCGAGGAGAACCTTTCCGCCGCATGGCA---GCGGCTGGCCGGAA--CCTACG 40234 Query 22639 TCGAGCGGCT-CGATTGGGCGACCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTC 22697 | || || | || | ||| |||| || | || ||||| ||||| || || | | Sbjct 40235 TGGAAAACCTGCCATGGCTCGA-CTGCGTCCAACGCTACGACCGGCCACATACCTTTCAC 40293 Query 22698 TACCTTGATCCGCCGTACTTCGAGACTGAAGGGTACGGCGTCG-CATTCCCTTTCACGGA 22756 ||| | || || ||||||| || | ||| ||||| |||| |||||||| | | Sbjct 40294 TACATGGACCCACCGTACTGGAAGGTCGCAGGCTACGGTGTCGATTTTCCCTTTGA-TCA 40352 Query 22757 GTACGAGAAGATGGCCGAGCGGCTGCGGTCGATCAAGGGGCGCGCGATCGTCAGCCTCAA 22816 |||||| |||||||||| |||| | | ||||| | | ||| ||||| |||| Sbjct 40353 ATACGAGCAGATGGCCGAATTCATGCGCCAGTGCGAGGGGAGGGTGATGGTCAGTATCAA 40412 Query 22817 CGACCATCCGGAGATCCGGCGCGTGTTCGCCGGTTTCCATATCGAGA 22863 |||||| ||||| |||||||| || || | ||||| || | |||| Sbjct 40413 CGACCACCCGGATATCCGGCGGGTATTTGATGGTTTTCACTTTGAGA 40459 Score = 141 bits (156), Expect = 3e-29 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 3000 GCCGGGAAAACGATGGTGCTGGAAGCCGGGATGAAGTACCAGGCCATCACGATGAATCCC 3059 ||||| ||||| |||||||||||||| || |||||||||| | |||||| ||||| ||| Sbjct 19872 GCCGGTAAAACCATGGTGCTGGAAGCGGGCCTGAAGTACCAAGGCATCACCATGAACCCC 19931 Query 3060 GGTGATGTCCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATCTGCCGCTGGTAT 3119 | | | ||| |||||||||| || || ||||| |||| || ||||||||||||| | Sbjct 19932 GAAGCCGCGCAGATGCTGGAGACCCGCGCCTTCAATGTCGAAGAGATCTGCCGCTGGTTT 19991 Query 3120 CGCGTTCCGCCGTTTATGGTCGGCCACA 3147 || || |||||||| |||||||| |||| Sbjct 19992 CGTGTGCCGCCGTTCATGGTCGGGCACA 20019 >seq60391 Length=4507 Score = 84.2 bits (92), Expect = 8e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 30873 TCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGAC 30932 || |||||||||||||| | ||| | ||| | || ||||||||||| |||| ||| Sbjct 4104 TCCCCCCATTGCTTGAAGAAGAAGGCCACGCCCTGTGCTGCGCACTGGTCACGCATAGAC 4163 Query 30933 CGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCAC 30991 || |||| |||| | || |||||||||| | ||||| ||||||||| ||||||| Sbjct 4164 CGCACCCACGCGGGGTTCAGTGGGCGGGCGCGCGGCCCGCTCTCGCCGCCGACGATCAC 4222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175170396057224