Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq115941 149 1e-30 seq86116 131 4e-25 seq109654 109 1e-18 seq98793 96.9 8e-15 seq97568 93.3 1e-13 >seq115941 Length=36387 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | || ||||| || || ||||||||||| | || || | ||||||| Sbjct 5593 AGTACCAAATGGAGGGTCGATTCCTTTTGGATATTATAGTCGGCCAGGGTGCGACCGTCT 5652 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || |||||||| ||||| |||||||| ||||| || || || || || || || Sbjct 5653 TCGAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCT 5712 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| |||| |||||| | || |||||||| || || ||| Sbjct 5713 TGGATCTTAGCCTTGACATTGTCTATGGTATCCGAACTCTCGACCTCTAGAGTGATGGTC 5772 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || ||||| || || || ||||| Sbjct 5773 TTACCGGTTAGGGTTTTCACGAAGATTTGCAT 5804 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||| || || || || Sbjct 4663 ATGCCACCCCTCAGACGCAGCACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCC 4722 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || || || || | ||| || ||||||||||| | ||||||||| || || Sbjct 4723 GCAAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGG 4782 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || || ||||| || || |||||||| || | ||||| || | || Sbjct 4783 GGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATC-AGAGCTCTC 4841 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || || || ||||| || || ||||| || |||||| Sbjct 4842 GACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATTTGCATT 4893 >seq86116 Length=13258 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || || |||| || || | ||| ||||| || || || ||| Sbjct 3649 GTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCTTCAAGCTGCTTGCCA 3708 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||| || || || ||||| || || || || || || ||||| || || Sbjct 3709 GCAAAGATCAGCCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTG 3768 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| ||| ||||| || || ||||| || || ||||| ||| Sbjct 3769 ACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTTCCGGTAAGAGTT 3828 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 3829 TTCACAAAGATCTGCAT 3845 Score = 127 bits (140), Expect = 5e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||| || | ||| || || || | ||||| || ||||| ||||| ||||| | Sbjct 2478 TCCACCTCGGAGACGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCCGC 2537 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || || || || || || || || ||||| ||||| |||||||| || || ||||| Sbjct 2538 CAGGGTCCTCCCATCCTCCAGCTGCTTACCAGCGAAAATAAGCCTCTGCTGGTCTGGAGG 2597 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTA 104510 || || || || ||||||||||| || || ||||| || | || || || | || | Sbjct 2598 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATTGTGTC-TGAGCTCTCAA 2656 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| | ||||||||||| ||||| | || || ||||| || ||||| Sbjct 2657 CCTCCAAGGTAATAGTCTTCCCAGTCAAGGTCTTGACAAAAATTTGCAT 2705 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| ||||| || | || || | || || || ||||| || ||| Sbjct 3193 GTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTCCGGCCATCCTCGAGTTGCTTACCA 3252 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || || || || || || || || ||||||||||| || || Sbjct 3253 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 3312 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| || | |||||| ||| ||| ||||| || || || || || || || ||| Sbjct 3313 ACATTGTCAATGGTATCTGAGCT---TTCCACCTCAAGGGTGATGGTTTTCCCGGTGAGT 3369 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 3370 GTCTTAACAAAAATTTGCAT 3389 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| | | |||| || || || || || || ||| Sbjct 2965 GTCGACTCCTTCTGGATGTTATAGTCGGCCAAGGTTCGTCCATCCTCGAGCTGCTTGCCA 3024 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| ||||| || || ||||| || || || || || ||||| ||||| ||||| Sbjct 3025 GCAAAAATGAGCCTTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTAGCTTTC 3084 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | ||| || || | ||||| || || || ||||| || Sbjct 3085 ACATTGTCAATTGTATCGGAACTTTCGACTTCCAAAGTAATGGTTTTCCCGGTAAGGGTC 3144 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 3145 TTCACAAAAATTTGCAT 3161 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || || || | ||||| | ||||| || || || || ||| Sbjct 3421 GTGGATTCTTTCTGGATGTTGTAATCGGCAAGAGTACGGCCGTCCTCAAGCTGCTTGCCA 3480 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | ||||| || || || || || ||||| || || |||||||| || || Sbjct 3481 GCGAAAATCAATCTCTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGAATCTTGGCCTTG 3540 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| ||| ||||| | || || || || |||||||| ||| Sbjct 3541 ACGTTGTCAATTGTGTCGGAGCTTTCGACCTCCAAGGTGATGGTTTTTCCAGTAAGGGTT 3600 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 3601 TTGACAAAGATTTGCAT 3617 >seq109654 Length=28343 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || ||||| || || ||||| | || || | ||||| Sbjct 18208 AAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTC 18267 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||||||||| || || || | ||| || || || || ||||| || || || Sbjct 18268 CTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 18327 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| || || || || || || || | || ||| || | || ||||| || || || | Sbjct 18328 CTGGATTTTGGCCTTGACGTTGTCGATTGTGTCG-GAGCTCTCGACCTCAAGGGTGATGG 18386 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||| |||||||||||||| Sbjct 18387 TCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||||| || || | || || || | || ||||| Sbjct 17996 GTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCCTCCAACTGCTTTCCG 18055 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || || || || || ||||| || || ||||||||||| || || Sbjct 18056 GCGAAGATCAGACGTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCCTTA 18115 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || | || || ||| ||| ||||| || || || ||||| || || || Sbjct 18116 ACGTTGTCGATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATGGTCTTCCCTGTGAGG 18172 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 18173 GTCTTGACAAAGATCTGCAT 18192 >seq98793 Length=19735 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || |||||||| | || ||||| | || || || || || || ||||| |||| Sbjct 5360 TTCCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCAG 5419 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||||| || || || | || ||||| ||||| || | ||||| |||||||||| Sbjct 5420 CAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAG 5479 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || ||||| |||||||||| Sbjct 5480 GGATGCCTTCCTTATCCTGAA 5500 >seq97568 Length=18938 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || |||||||| | || ||||| | || || || || || || ||||| || | Sbjct 7136 TTCCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCCG 7077 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||||| || || || | || ||||| ||||| || | ||||| |||||||||| Sbjct 7076 CAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAG 7017 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || ||||| |||||||||| Sbjct 7016 GGATGCCTTCCTTATCCTGAA 6996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149444075365008