Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq7763 165 2e-36 seq24404 98.7 3e-16 seq51760 82.4 2e-11 >seq7763 Length=1092 Score = 165 bits (182), Expect = 2e-36 Identities = 315/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 18782 TTGCCGGCGATTTCTTCCATCGTCAGCGTCGAGGCCGCCACCTTGTTGGTGATCTGGCGG 18841 ||||||||||| || || || ||| || ||| | |||||||||| ||||||| Sbjct 385 TTGCCGGCGATCTCGTCGATACGCAGGGTACCGGCGGACACCTTGTTGACTGCCTGGCGG 444 Query 18842 CGCAGGAAGCTGCGAATTTTGCGC--GGCATGTAGAAGGCCGGGCGGCCCATGCCCACGT 18899 ||||||| || | | | |||| ||| |||||| ||||||| | | || | Sbjct 445 CGCAGGACGCCGAGCACGGTGCGGTTGGC--GTAGAACACCGGGCGCACACCGGTCAGGC 502 Query 18900 TCGGGATGA-GTTCGACCGCCTGGGTCATCAGGTCGATGAGGTCGGCGCCCGCGCTGGCG 18958 | ||||| | || | |||||||||||||||||||||||||||||||||| |||| Sbjct 503 TGTGGATGGTGGTC-AGGGCCTGGGTCATCAGGTCGATGAGGTCGGCGCCCGAAGCGGCG 561 Query 18959 TTTTTCGTCAGTTCGGACACGTCCACATTGGCGATGCGGACGACGTAACGCCAGTCGCGC 19018 || || || |||| || ||| || | |||||||||||||| ||||| ||||||||| | Sbjct 562 TTCTTGGTGAGTTGGGTCACATCGATGTTGGCGATGCGGACCACGTAGCGCCAGTCGGCC 621 Query 19019 AGGGTCAGGCCGATGTCCCACTTGTAGTGGGTGCGGTAGCCCTGGTAGCGGCCGCCGGCG 19078 | || | || | ||||| | |||| |||| | || ||||| | | | Sbjct 622 ACGGCGACACCACACTTCCACTGGAAGTGTTCCATGTAGGCGCGGAAGCGGTTGTTGCTG 681 Query 19079 GCGTCGATCAGCGTGTCCT---CGCCGAGGTC-ACGCGATTGCAGGCCGGCCTGCGAACC 19134 | |||| || | ||||| ||| ||||| | || | ||||||||| | ||||| Sbjct 682 ACATCGA--AG-GCGTCCTGGATGCCCAGGTCTTCACG-TACCAGGCCGGCGCGGGAACC 737 Query 19135 CTTCGGGTAGATGGTATGCAGGGTGTTCGGCCCCCACACCGTCAGCCAGATGGATGCGTT 19194 ||| || |||| | | | || | ||| ||||| | ||||||||||||| | ||| Sbjct 738 CTTGGGATAGAAGCCGTAGACGGAGCGCGGGCCCCAGCCGATCAGCCAGATGGAGGTGTT 797 Query 19195 GTCGCTGCCCGTGCCGCCGGCGTCGATGATGTTC 19228 || | | || ||||||||||||| ||| | |||| Sbjct 798 GTTGGTACCGGTGCCGCCGGCGTTGATCACGTTC 831 >seq24404 Length=1558 Score = 98.7 bits (108), Expect = 3e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 16822 CCAGTTGGTCGCGCCCAGGCGGCGCAGTTCACGCGGCGCATAGTTCGGATGCACGAGCGT 16881 |||| |||| || |||| || |||||| ||||| || ||| || || ||| || Sbjct 1521 CCAGCTGGTGGCTCCCATCCGCTTCAGTTCTCGCGGTGCGTAGCCAGGGTGAGCGATGGT 1462 Query 16882 GAGCACGTCAGCCGACTGGACATAGTGGATGTTGAACAGGTCGGCTTCGGCGTAGGGATT 16941 ||||||||||| |||||| |||| | |||||||||||||||||| ||||||| | Sbjct 1461 CAGCACGTCAGCGGACTGGGTGTAGTTCAGGTTGAACAGGTCGGCTTCCACGTAGGGCGT 1402 Query 16942 GGCGATTTCGTAGGGCACGGCGCCGTCCAGCAGCGTGCCGCCGTTGGTATGGAAGCG 16998 || ||| ||| || | | || || |||||| |||||| ||||| |||||| Sbjct 1401 GGAGATCTCGAAGATCTGGCCGATGTTCAGCAGGTAGCCGCCATTGGTGATGAAGCG 1345 >seq51760 Length=3249 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 15596 GTGACGACGCGCTGCGGATGCACCGCGCCATCGGCCAGGATGCTGACGGTTTTCCCTTCG 15655 |||||||| |||||||| ||| |||||| ||||||||||||||||| || |||||| Sbjct 2161 GTGACGACCCGCTGCGGCGCCACATTGCCATCAGCCAGGATGCTGACGGTCTTGCCTTCG 2220 Query 15656 AGGTGCTCCAGGCCG 15670 || || ||||||||| Sbjct 2221 AGATGGTCCAGGCCG 2235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135642277793960