Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq13017 268 6e-67 seq27057 187 2e-42 >seq13017 Length=1175 Score = 268 bits (296), Expect = 6e-67 Identities = 555/804 (69%), Gaps = 28/804 (3%) Strand=Plus/Plus Query 7908 CTTTCACGAAGCCGAACTGTCGCTTGATGATGCGAAATGGGTGCTCCACCCTGGCCCGGA 7967 |||||||| | || ||||| |||||||| | |||||| || ||||| ||| ||||||| Sbjct 242 CTTTCACGTAACCAAACTGCCGCTTGATCACGCGAAACGGATGCTCGACCTTGGCCCGTG 301 Query 7968 TGCTG-GCTTTCATGTATTCGATGTTGA---TGGCCGTTTTGTTCT-TGCGTGGATGCTG 8022 | ||| || || | | ||||| ||| |||| ||||| | | || | |||| Sbjct 302 T-CTGAGCCTTGCAGAACTCGATCTTGCGCTTGGC---TTTGTACAGTACGCTGC-GCTG 356 Query 8023 TTTCAAGGTTCTTACCT-TGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGG 8081 |||| | || | ||| | | ||| | || ||| ||||| ||| || | Sbjct 357 GTTCA-GCTTGGAATAGGTGCTGCGACGCGCTGCAATCTGCCAGATCACCCCCCGATTTT 415 Query 8082 CCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCT 8141 | |||| |||||| | | || ||| |||||||| || | || | || | Sbjct 416 CATGCTCTTCGCGCCTTTCGACACCGGTGTAACCGGCATCTGCATACACGGCGTTTTCTT 475 Query 8142 CTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCA 8201 | ||||||||||| | | ||| ||| ||| || | | ||||| |||||| ||| Sbjct 476 CGCCATGCAGCAGTTCAGCCACCTGCGTGACATCGGCCACATTGGCAGCGGTG----CCA 531 Query 8202 GGC---TG-TGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAG 8257 | || || |||||| || | ||||| |||| ||||| |||||||| || ||| Sbjct 532 TGGACGTGATGCACCAGGCCGGACTCGACATCGGCACCGATGTGCGCCTTCATCCCGAAG 591 Query 8258 TGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCG-TTGCTGCTCTTTGTT 8316 ||||| ||||||||||||||| |||||||| ||||| || |||| ||||| || Sbjct 592 AAATACTGACCGCCTTTCTTGGTCTGGTGCATCTCGGGATCACGCTTGC-CTTCTTTATT 650 Query 8317 CTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCAT 8376 |||||||||||||| || | ||| |||||||||||||| | ||||||||| || | Sbjct 651 TTTGGTCGAGCTGGGGGCATGAATAATGGTGGCATCGACGATGGTGCCTTGGCGCAGCGA 710 Query 8377 GACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGG-GCCAGTTGAT 8435 | |||| ||| ||| | | |||||| | | || |||| ||| || || |||| Sbjct 711 CAGGCCTTTTTCCTGCAGATAACCATTGAT-GACCGCAAGGATTGCCGGTGCGAGCTGAT 769 Query 8436 GCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCA-AGGCGCTATCC 8494 ||| |||||||| ||| ||||| |||||||| |||||| || || | ||||| | | Sbjct 770 GCTTCTCCAGCAAGTGCCGGAAGTTCATGATCGTGGTGTCTTCGGGGATTGGCGCGCT-C 828 Query 8495 AGGGATAACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCG 8554 || | | | || ||| | ||||||| | ||||||||| || || |||||||| || Sbjct 829 AGCGTCAGGAGTGCGAACTGGCGCATGGGCGTGATTTCGTAGAGCGCTTCTTCCATGGCC 888 Query 8555 CCATCGCTCAGGTTGTACCAATGCTGCATGCAG-TGAATGCGTAGCATGGTTTCCAGCGG 8613 ||||||||| | |||| | ||||| ||| || ||||| |||||||||||||| || Sbjct 889 GGGTCGCTCAGGGAGAACCAGTTCTGCA-ACAGATGGATGCGCAGCATGGTTTCCAGAGG 947 Query 8614 ATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTT 8673 ||| ||| | || || ||||||||||| ||||| ||||| | |||| || | Sbjct 948 ATAGGGTTTTCTACCGCCGCCGGCCTTGGGGTAGAACGGTTCGATCAGCTCCAGCAGGCC 1007 Query 8674 TTGCCATGGCAGAATCTGCTCCAT 8697 | ||| |||| | ||| ||||| Sbjct 1008 TGCCCAGGGCACCACCTGATCCAT 1031 >seq27057 Length=1822 Score = 187 bits (206), Expect = 2e-42 Identities = 460/693 (66%), Gaps = 10/693 (1%) Strand=Plus/Minus Query 71875 CCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCC 71934 |||| ||| | ||||||| || || ||||||||||| | ||||| ||||||| | Sbjct 689 CCGACCTCGACGAGAAGACCAGCGGCCTGCAGCCGTCCGACTTGATCATCGTCGCCGGTC 630 Query 71935 GCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTA 71994 | || || ||||| |||||||| || |||||||| || |||||||| |||| | || | Sbjct 629 GTCCCTCCATGGGTAAGACCACCTTCGCGATGAACCTGGTCGAAAACGCCGTGTTGCGCA 570 Query 71995 ACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCT 72054 ||| ||| |||| |||| | ||| |||||||| | | |||||| ||||| Sbjct 569 GCGACAAGACCGTCCTGGTGTACTCCCTGGAGATGCCCGGTGAATCGCTGATCATGCGGA 510 Query 72055 CACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACG 72114 || | || || | || | || ||||| | || | || || || | || | Sbjct 509 TGCTCTCGTCCCTAGGCCGTATCGACCAGACCAAGGTGCGTTCCGGCCAGCTGGAAGATG 450 Query 72115 AGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTA 72174 | || ||| ||||| | | || || | ||| | | | | || | || | Sbjct 449 ACGACTGGCCGCGGCTGACCTCGGC---GGTCAACCTGCTCAATGACCGCAAGCTGTTCA 393 Query 72175 TTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATA 72234 | || ||| | | | | || | ||| | ||| | ||| | || || | Sbjct 392 TCGACGACACTGCGGGGATCAGCCCCTCGGAGATGCGTGCACGCACCCGCCGCCTGGTGC 333 Query 72235 AAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCG 72294 ||| | || | | | | |||| ||||||||||||||||| | |||| |||| | Sbjct 332 GTGAACACGGCGATATTGCCTTGATCATGATCGACTACCTGCAGTTGATGCAGATCCCGG 273 Query 72295 AGCTGCAA----GATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350 | | || || | ||| || || ||| |||||||||| || || |||| || Sbjct 272 -GTTCCAGCGGTGACAGCCGGACCAACGAGATTTCCGAGATTTCCCGGTCCTTGAAAGCC 214 Query 72351 TTGGCGAAGGAATTACAAGTACC-GGTGGTGGCATTGTCACAACTTAATCGATCGCTTGA 72409 |||| |||||||| ||| | || ||||||||| |||| || || || || || || || Sbjct 213 CTGGCCAAGGAATT-CAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGA 155 Query 72410 ACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCA 72469 ||| ||| | |||| || ||||| || || || || || ||||| || || || ||||| Sbjct 154 ACAACGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCGGGTGCGATCGAGCA 95 Query 72470 GGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAAT 72529 |||||| ||| |||| ||||| |||| |||||||| || || ||||| || | ||| Sbjct 94 GGACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTATACCACCCCGAGACCGAGCA 35 Query 72530 GAAGGGCATTGCCGAGGTAATTATCGGAAAGCA 72562 || ||||| |||||| | || ||||| ||||| Sbjct 34 CAAAGGCATCGCCGAGATCATCATCGGCAAGCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302745611228796