Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq130700 122 5e-23 seq102802 118 6e-22 seq127488 116 2e-21 seq7290 109 3e-19 seq12059 105 3e-18 seq132113 104 1e-17 seq121978 104 1e-17 seq109957 104 1e-17 seq93960 104 1e-17 seq91034 104 1e-17 seq62106 104 1e-17 seq132265 102 4e-17 seq89525 100 1e-16 seq107240 95.1 6e-15 seq84866 95.1 6e-15 seq71593 95.1 6e-15 seq130142 93.3 2e-14 >seq130700 Length=82521 Score = 122 bits (134), Expect = 5e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 483 AATAAAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 424 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 423 GACGCTCTAACCAGCTGAGCTAATAGGCC 395 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| ||||| | ||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 2846 TTAATGAAAAAA-ACATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 2788 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 2787 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 2757 >seq102802 Length=22593 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 9312 AATAAAAATTAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 9253 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 9252 GACGCTCTAACCAGCTGAGCTAATAGGCC 9224 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| |||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 11425 AATAAAAAATAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 11366 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 11365 GACGCTCTAACCAGCTGAGCTAATAGGCC 11337 >seq127488 Length=62093 Score = 116 bits (128), Expect = 2e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| | ||| || |||| || |||||||||||| | | |||||||| ||||||||| Sbjct 39802 AAATTTCAAATAAAAAAAATATACAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 39861 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 39862 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 39902 >seq7290 Length=1086 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 268 AACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACC 327 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 328 AACTGAGCTAATGGGCC 344 >seq12059 Length=1164 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||| | || ||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 1087 AACAAAAATTTAAGGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 1028 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 1027 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 997 >seq132113 Length=122043 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 56828 ATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 56769 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||| |||||||||| |||| Sbjct 56768 AACCAGCTGAGCTAATAGGCC 56748 >seq121978 Length=45192 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | | ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 38070 AAAATTATAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 38129 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 38130 TCTAACCAGCTGAGCTAATAGGCC 38153 >seq109957 Length=28594 Score = 104 bits (114), Expect = 1e-17 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| || ||| |||| || || | ||||||||| | | |||||||| ||||||| Sbjct 27780 AAATAAAGTTTTACAAAAAGATTAATAAATGGCCCATGCAGGTCTCGAACCTGCGACCTT 27839 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||| |||||||||| |||| Sbjct 27840 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 27882 >seq93960 Length=16837 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 3425 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 3484 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3485 GCTGAGCTAATAGGCC 3500 >seq91034 Length=15282 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||| ||| |||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 2094 ATAACAAAAAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 2152 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 2153 ACGCTCTAACCAGCTGAGCTAATAGGCC 2180 >seq62106 Length=4811 Score = 104 bits (114), Expect = 1e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||| | || ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 4658 TAATAAGATAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 4717 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 4718 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 4748 >seq132265 Length=119597 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 21804 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 21745 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 21744 CAGCTGAGCTAATAGGCC 21727 >seq89525 Length=14565 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 13266 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 13207 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 13206 TGAGCTAATAGGCC 13193 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 14002 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 13943 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 13942 TGAGCTAATAGGCC 13929 >seq107240 Length=64722 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2419 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2478 Query 11516 TGAGCTAATGGGCC 11529 ||||| ||| |||| Sbjct 2479 TGAGCCAATAGGCC 2492 >seq84866 Length=12539 Score = 95.1 bits (104), Expect = 6e-15 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAA-ATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||| ||||| | ||||| || | || || |||||| | | |||||||| ||||||| Sbjct 2022 AAATGTAGAAGAGAGAAAAACATAACAAATGACCCATGCAGGTCTCGAACCTGCGACCTT 1963 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||| |||| |||||||||| |||| Sbjct 1962 CGCGTTATTAGCACAACGCTCTAACCAGCTGAGCTAATAGGCC 1920 >seq71593 Length=7465 Score = 95.1 bits (104), Expect = 6e-15 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAA-ATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||| ||||| | ||||| || | || || |||||| | | |||||||| ||||||| Sbjct 4189 AAATGTAGAAGAGAGAAAAACATAACAAATGACCCATGCAGGTCTCGAACCTGCGACCTT 4248 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||| |||| |||||||||| |||| Sbjct 4249 CGCGTTATTAGCACAACGCTCTAACCAGCTGAGCTAATAGGCC 4291 >seq130142 Length=91302 Score = 93.3 bits (102), Expect = 2e-14 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 ||||| | | |||||||| ||||||||||||||||||||||||||||| |||| ||||| Sbjct 49849 CCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAG 49908 Query 11520 CTAATGGGCC 11529 ||||| |||| Sbjct 49909 CTAATAGGCC 49918 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261069009056176