Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq124121 331 2e-86 >seq124121 Length=49848 Score = 331 bits (366), Expect = 2e-86 Identities = 468/656 (71%), Gaps = 4/656 (1%) Strand=Plus/Plus Query 26026 CCAGCCCA-TCATCCCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGC 26084 ||| |||| ||||||| ||||| || || || |||||||| || |||||| || |||||| Sbjct 39779 CCACCCCAATCATCCCTTGGATGGGCGGCAAACGCCGCCTGGCCGACCGCCTCATCCCGC 39838 Query 26085 TTTTCCCACGCCACTCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCC 26144 | ||||||| |||| ||||| ||||| ||||| || | || || ||||||||| Sbjct 39839 TATTCCCACCCCACGAGTGCTACGTCGAAGTCTTCGCCGGCAGCGCTGCCTTGTTCTTCC 39898 Query 26145 TACGGCCGGTGCCGGCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACC 26204 | || || || || ||| ||||| |||||||||||||||||||||||||| || Sbjct 39899 TCCGCCCCCAACCCGCACCTGTTGAAGTCCTCAACGACATCAACGGCGACCTGGTATGCC 39958 Query 26205 TGTACCGCGTCGTTCAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGCTCA 26264 ||||||||||||| ||| |||| ||||||||||||||||||| ||||| |||||||||| Sbjct 39959 TGTACCGCGTCGTACAGAATCACTTGGAAGAGTTCGTCCGCCAATTCAAGTGGGCGCTCA 40018 Query 26265 GCTCTCGCCAGGTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCC 26324 |||| || ||||| ||| |||||| || |||||| |||||||| || |||||||||| Sbjct 40019 GCTCACGGCAGGTATTCGAGTGGCAAAAGATGACCCGCCCGGAAACCCTCACCGACATCC 40078 Query 26325 AGCGCGCCGCGCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCC 26384 | || || || || || | |||||| || || ||||||| | | ||| |||| Sbjct 40079 AACGTGCGGCCCGATTCTTCTACCTCCAACACCATGCGTTCGCTGCCAAAGTCTCCGGCC 40138 Query 26385 AGAGCTACGGAACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTGGAAGAAA 26444 ||| || ||| || || || || | |||| | |||| ||||| || | || || | Sbjct 40139 AGACCTTCGGTACGGCGACAACAGCGGCGCC---GATCAATCTGTTACGGATCGAGGAGA 40195 Query 26445 CACTGTCGGCGGCTCACCTGCGGCTGAGCAATACCTACATCGAGCACCTCAGCTGGCAGG 26504 || || || || | ||||||| | |||||| | || |||| |||| | Sbjct 40196 ACCTTTCCGCCGCATGGCAGCGGCTGGCCGGAACCTACGTGGAAAACCTGCCATGGCTCG 40255 Query 26505 ACTGCCTCCGGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGG 26564 ||||| ||| ||||| || || || ||| | || |||||||| ||||||||| Sbjct 40256 ACTGCGTCCAACGCTACGACCGGCCACATACCTTTCACTACATGGACCCACCGTACTGGA 40315 Query 26565 AGACGGAGGGCTATGGCGTGCCATTCGGCTTCGAGCAGTACCAGGAGATGGCAGTGATGT 26624 || | ||||| || || || ||| || || ||| || ||||||| | | Sbjct 40316 AGGTCGCAGGCTACGGTGTCGATTTTCCCTTTGATCAATACGAGCAGATGGCCGAATTCA 40375 Query 26625 TCCGCCAACTCAAGGGCAAGGCCATCATCAGCCTGAACGACCACCCCGAGATCCGG 26680 | ||||| | |||| | || || |||| | ||||||||||| || |||||| Sbjct 40376 TGCGCCAGTGCGAGGGGAGGGTGATGGTCAGTATCAACGACCACCCGGATATCCGG 40431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122689885986712