Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq78672 836 0.0 seq93341 565 1e-156 >seq78672 Length=10203 Score = 836 bits (926), Expect = 0.0 Identities = 778/983 (79%), Gaps = 6/983 (1%) Strand=Plus/Minus Query 9050 AGATGTGCCGGCAGACCGTGGATCAGCAGGGTGTCGGAGCCTGAGTCGAACTCCACCTTG 9109 || || | |||||| || | ||| | || |||| ||| | || |||| | || | |||| Sbjct 8136 AGTTGGGTCGGCAGGCCCTTGATGATCAAGGTGCCGGCGGCTTCGTCGTATTCGATCTTG 8077 Query 9110 GTGCCGAGGAGGTGTGCCTCGAAGCTGATCGACAGGCCTTCGGCGCGGCCGGTGAAGCGG 9169 ||| || ||||| ||||| |||||||| |||| || |||||||| |||||||| ||| Sbjct 8076 TCGCCCAGCAGGTGCGCCTCAAAGCTGATGGACAAACCCTCGGCGCGACCGGTGAAACGG 8017 Query 9170 CGGAACTGGTTGAAGGTGCGCTTGTCCGCCGGGATCTCCGGCGACAGGCCGTAGTCCTTG 9229 || |||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct 8016 CGAAACTGGTTGAGCGTGCGTTTATCCGCCGGGATTTCCGGCGACAGGCCATAGTCCTTG 7957 Query 9230 TGCTGGATGAAGTCGTAGAACGCCCGTGGCTGCTGTTCGTCGATCAGTTCGGAAAGGGCG 9289 | |||| ||| ||||||||| ||| | | ||| ||||||| | || | | Sbjct 7956 TTGCGGATATGGTCATAGAACGCCTTAGGCCGATCTTCATCGATCAACCCTGACAATTCT 7897 Query 9290 TCGAGGGTCATCGGCTCACCGAGGCGTGCCTGCGCGGTGGCGTAGTCGACCAGCGACACG 9349 || || |||||| |||||||| ||||| | |||||||||| ||||| | | | Sbjct 7896 TCCAGCCCCATCGGTTCACCGAGCTTGGCCTGGCTGCTGGCGTAGTCCACCAGGGTCTTG 7837 Query 9350 GTTTTTTCGCGGGCCTGTTCCTCGGCCATGCCCTCGCTTTCCACGAAGTCGCTGAAGGCT 9409 ||||| |||||||| || || | || | | |||||||| |||||||| ||||| || Sbjct 7836 GTTTTCTCGCGGGCGGACTCGTCCGGCAGGTCTTCGCTTTCGACGAAGTCACTGAACGCC 7777 Query 9410 TTCAGCAGGGGTGCGCGTCTCGCCCGG-CGATCGACCCCTTCCTGGCAGCCGATGAAGTC 9468 || ||||||| |||| ||||||||||| | ||||| ||||||||||||||||||||||| Sbjct 7776 TTGAGCAGGG-TGCGGGTCTCGCCCGGGCCGTCGACGCCTTCCTGGCAGCCGATGAAGTC 7718 Query 9469 GCGGAAGTAGTCGGAGAGCTTTCTCCCGCCCTTGCCCTTGATGAACGAGATGTACTGCTT 9528 |||||| || || |||| ||| | ||| |||||||||||| || || ||||||||||| Sbjct 7717 GCGGAAATACTCCGAGACCTTCTTGCCGTTCTTGCCCTTGATAAAGGAAATGTACTGCTT 7658 Query 9529 CGACTGCTTGTTGTTGCGCCACTCGGAGAGGTTGATTCGCGCCGCCAGGTGTAACTGGCC 9588 |||||||||||||| |||||||||| | ||| || || ||||||| ||| || ||||| Sbjct 7657 GGACTGCTTGTTGTTCTGCCACTCGGACACGTTTATACGTGCCGCCAAGTGCAATTGGCC 7598 Query 9589 GAGGTCGAGGTGGCTCGACGGGGTGACGTCCAGTGACTCGTTCACCGCCGCCCCTTCGCT 9648 |||||| ||||||| ||| ||||| |||||||| ||| |||||||| | |||||||| Sbjct 7597 GAGGTCCAGGTGGCGCGAGGGGGTCACGTCCAGCTCGTCGGTCACCGCCACGCCTTCGCT 7538 Query 9649 GTGGTGCAGCAGGGCGATCGCCAGGTAGTCGGTCATGCCCTGCTGGTAGTGGGCGAACAG 9708 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 7537 GTGGTGCAGCAGGGCGATGGCCAGGTAGTCGGTCATGCCTTGCTGGTAGTGGGCGAACAG 7478 Query 9709 TACGTAGCCGCCGGTGGAGAGGTTGGACTCTTCCATCAGCTTCTGCAGGTGTTCCACCGC 9768 ||| | |||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 7477 TACATGGCCGCCGGTGGAGAGGTTGGACTCCTCCATCAGCTTCTGCAGGTGCTCGACCGC 7418 Query 9769 CTCGCGGCTGAACCCCACGAAGTCGCGGTCGCCTTCCAGGTACTCGCCGAGCCAGCCGCT 9828 | ||||||||| |||||| | | || || | ||||| | ||||||||| Sbjct 7417 CGTGCGGCTGAAGGTGGTGAAGTCCTGCCCACCGTCGAAATACTCCTTCAACCAGCCGCT 7358 Query 9829 GAACGGGTAGGCCCCGGACTCGCCCTGGAAGAAGCCCCAGGCCTTG---TTCTTGGCGTT 9885 |||||||| || ||||||||| | |||||||| |||||||||||| | ||||||||| Sbjct 7357 GAACGGGTGCGCGCCGGACTCGGCATGGAAGAAACCCCAGGCCTTGCCTTGCTTGGCGTT 7298 Query 9886 GTAGCTTTCGTTGAGGTCGGCCAGCAGGTTCTCGATGACCTGGGAGTTACCCAGCTCAGC 9945 ||||| |||||||||||||| |||| |||||||||| | || | | ||||| | Sbjct 7297 ATAGCTCTCGTTGAGGTCGGCAAGCATGTTCTCGATGGCGGCCGATTCGGCAAGCTCGGA 7238 Query 9946 GTCGCGCGCATGGAGCACGGTCGGGGTGCCGTCGGGCTTCTTGTCGATCAGGTGGATGAT 10005 |||||| || || || || | || ||||||||||| || |||||||||| ||||| ||| Sbjct 7237 GTCGCGGGCGTGAAGAACTGCAGGTGTGCCGTCGGGTTTTTTGTCGATCAAGTGGACGAT 7178 Query 10006 GGAATGGCGGATAGGCAT-GGCT 10027 | |||| ||||| ||||| |||| Sbjct 7177 GCAATGACGGATCGGCATAGGCT 7155 >seq93341 Length=16452 Score = 565 bits (626), Expect = 1e-156 Identities = 706/959 (74%), Gaps = 19/959 (2%) Strand=Plus/Minus Query 9076 CAGGGTGTCGGAGCCTGAGTCGAACTCCACCTTGGTGCCGAGGAGGTGTGCCTCGAAGCT 9135 ||| ||| || | || ||||||||| | ||| ||| || ||||| || |||||||| Sbjct 9261 CAGCGTGCCGCCGGCTTCGTCGAACTCGATCTTATGGCCCAGCAGGTGCGCTTCGAAGCT 9202 Query 9136 GATCGACAGGCCTTCGGCGCGGCCGGTGAAGCGGCGGAACTGGTTGAAGGTGCGCTTGTC 9195 |||||||| ||||| || ||||||||||| || ||||| | ||||| ||| ||| || Sbjct 9201 GATCGACATACCTTCAGCCCGGCCGGTGAATCGCCGGAATTTGTTGAGGGTCTTCTTATC 9142 Query 9196 CGCCGGGA---TCTCCGGCGACAGGCCGTAGTCCTTGTGCTGGATGAAGTCGTAGAACGC 9252 || ||| | |||| | | | |||||||||| | || ||||||||||||||| || Sbjct 9141 CGGCGGCAGGGTCTCGG---AAATACCGTAGTCCTGGGCCTTGATGAAGTCGTAGAA-GC 9086 Query 9253 CCGT-GGCTGCTGTTCGTCGATCAGTTCGGAAAGGGCGTCGAGGGTCATCGGCTCACCGA 9311 | | ||| | | |||||||||||| | || | |||| ||||| ||||| || || | Sbjct 9085 TCTTCGGCCGGTCTTCGTCGATCAGGCCCGACAACTCGTCCAGGGTGATCGGTTCGCCCA 9026 Query 9312 GGCGTGCCTGCGCGGTGGCGTAGTCGACCAGCGACACGGTTTTTTCGCGGGCCTGTTCCT 9371 | ||||| || ||| |||| |||||| | || || ||||||||| ||| | Sbjct 9025 GCTTGGCCTGGGCCATGGAGTAGCTGACCAGGGCGTGCGTCTTCTCGCGGGCCGCTTCTT 8966 Query 9372 CGGCCATGCCCTCGCTTTCCACGAAGTCGCTGAAGGCTTTCAGCAGGGGTGCGCGTCTCG 9431 || ||||| ||||||||||||||||||||||||| || ||||||| | |||| || ||| Sbjct 8965 CGACCATGTCCTCGCTTTCCACGAAGTCGCTGAACGCCTTCAGCAACG-TGCGGGTTTCG 8907 Query 9432 CCCGGCGA-TCGACCCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTAGTCGGAGAGCTTT 9490 | ||||| |||| |||||||||||| ||||||||||||||||| || ||| |||||| Sbjct 8906 CTCGGCGCGTCGATCCCTTCCTGGCAACCGATGAAGTCGCGGAAATACTCGTTGAGCTTC 8847 Query 9491 CTCCCGCCCTTGCCCTTGATGAACGAGATGTACTGCTTCGACTGCTTGTTGTTGCGCCAC 9550 | || ||||||||| | | |||||||||||||||||||||| |||| |||| Sbjct 8846 CGACCCTGCTTGCCCTTCAGGTACGAGATGTACTGCTTCGACTGGCGGTTGACCTGCCAT 8787 Query 9551 TCGGAGAGGTTGATTCGCGCCGCCAGGTGTAACTGGCCGAGGTCGAGGTGGCTCGACGGG 9610 ||| || |||||| ||||| |||||| | | ||| | ||||| ||| | || || Sbjct 8786 TCGCTGATGTTGATGCGCGCGGCCAGGCGGATGTGGTCCAGGTCCAGGCGCTTCACCGTC 8727 Query 9611 GTGACGTCCAGTGACTCGTTCACCGCCGCCCCTTCGCTGTGGTGCAGCAGGGCGATCGCC 9670 | | |||| ||| ||| || || ||||| | | |||| ||||||||| || Sbjct 8726 ATCAGTGCCAGCTCTTCGGTCATCGTTACCGCTTCGGTTTCCTGCACCAGGGCGATTACC 8667 Query 9671 AGGTAGTCGGTCATGCCCTGCTGGTAGTGGGCGAACAGTACGTAGCCGCCGGTGGAGAGG 9730 ||||| ||||||||||| |||||||||||| ||| || ||| || ||||||| |||| Sbjct 8666 AGGTAATCGGTCATGCCTTGCTGGTAGTGGCAGAAGAGGGCGTGCCCACCGGTGGTGAGG 8607 Query 9731 TTGGACTCTTCCATCAGCTTCTGCAGGTGTTCCACCGCCTCGCGGCTGAACCCCACGAAG 9790 || ||||||||||||||||| ||||||||| || || | |||||| ||| ||| Sbjct 8606 TTCGACTCTTCCATCAGCTTGGTCAGGTGTTCGACGGCGGTGGTGCTGAAAGCCAGAAAG 8547 Query 9791 TCGCGGTCGCCTTCCAGGTACTCGCCGAGCCAGCCGCTGAACGGGTAGGCCCCGGACTCG 9850 ||| | | || ||||||||| |||||||||||||||||| ||||| || || || || Sbjct 8546 TCGGTGACACCGGCCAGGTACTTGCCGAGCCAGCCGCTGAAAGGGTAAGCGCCCGATTCC 8487 Query 9851 CCCTGGAAGAAGCCCCAGGCCTT---GTTCTTGGCGTTGTAGCTTTCGTTGAGGTCGGCC 9907 || ||||| |||||| |||| | | |||||||||||||||||||||| | | | Sbjct 8486 TGATGAAAGAACCCCCAGCCCTTGCCGGTGGTGGCGTTGTAGCTTTCGTTGAGCTGGCTC 8427 Query 9908 AGCAGGTTCTCGATGACCTGGGAGTTACCCAGCTCAGCGTCGCGCGCATGG---AGCACG 9964 | |||| ||| ||||| | || |||| | ||| || || || || Sbjct 8426 ATTAGGTCGTCGCGCGCCTGGCTCTCGACCTGCTCGGATGCGC---CAAGGAACAGAACA 8370 Query 9965 GTCGGGGTGCCGTCGGGCTTCTTGTCGATCAGGTGGATGATGGAATGGCGGATAGGCAT 10023 | |||| ||||||||||||||||||||||| |||||||| | |||||| | |||||| Sbjct 8369 GCCGGGCTGCCGTCGGGCTTCTTGTCGATCTTGTGGATGACGCTATGGCGTACAGGCAT 8311 Score = 226 bits (250), Expect = 1e-54 Identities = 193/237 (81%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 5739 CCATGGATCGTTGGCTCGCGCGATCGCTGCCATCGGCGGCGGGCTGACGCTGTTACCGCA 5798 |||||||||||| || | || | ||||||||| |||||||||||||||||||| ||||| Sbjct 12440 CCATGGATCGTTTGCCCTTGCAAGCGCTGCCATTGGCGGCGGGCTGACGCTGTTTCCGCA 12381 Query 5799 CATATGCACCTGTTCGGTTTTGCTGAACGGCTTGCCGTCAGCGCCGCGGTCGATGATGTA 5858 ||| |||||||| | || ||| ||||||||| |||||| |||||| || ||||||||| Sbjct 12380 CATGTGCACCTGCTGAGTCTTGGTGAACGGCTCGCCGTCGGCGCCGTGGCTGATGATGTA 12321 Query 5859 GTCGGTCGGAAATCCCTGGGCTCGGTACAGTTCGGGCGGTTGCAGCATCCGCAAGCAGAT 5918 ||| | ||| || || ||||| ||| || |||| ||| | ||||||||||| |||||| Sbjct 12320 GTCCGCCGGGAAGCCTTGGGCCTTGTAAAGCTCGGACGGCTTCAGCATCCGCAGGCAGAT 12261 Query 5919 GTCGACTATCACGTAGGGGGTGCCTTTTACGAACACGGTCACGAGAGCCAGGCGGTC 5975 |||||| ||||||||||| ||||| || || | |||||| || || ||| | ||||| Sbjct 12260 GTCGACGATCACGTAGGGCGTGCCCTTGACCATCACGGTGACCAGGGCC-GCCGGTC 12205 Score = 125 bits (138), Expect = 3e-24 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 3976 CCCTCTGCCAACGCCTGCTCTTCGCTGATGTCCTGCAGCCGCTCGACGCGTACGTCGGTG 4035 ||||| ||| ||||| || |||||||||||||||| ||||||||| || ||||||||| Sbjct 14060 CCCTCGGCCTTGGCCTGGTCGTCGCTGATGTCCTGCAACCGCTCGACCCGCACGTCGGTG 14001 Query 4036 ATCTCAAGCAGGATGCGGGAGGCCCAACGCGGCATATGGATGCTCGG 4082 ||||| |||||||||||| |||||| |||||||| |||||||| || Sbjct 14000 ATCTCCAGCAGGATGCGGCTGGCCCAGCGCGGCATGTGGATGCTGGG 13954 Score = 91.5 bits (100), Expect = 6e-14 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 4396 TTCACCACTCGGCGGGTGACCGTCTTCCTACCTTCCAGGATGGCGCGGACCATCGGCCCG 4455 |||||| | ||||| ||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 13643 TTCACCGCCCGGCGCGTGACCGTCTTCCGGCCTTCCAGGATGGCGCGCACCATCGGCGCC 13584 Query 4456 GTGAATAGGATCGGACGTTCTTT 4478 | ||| ||||| || ||||| || Sbjct 13583 GAGAACAGGATGGGCCGTTCCTT 13561 Score = 87.8 bits (96), Expect = 7e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3798 GGTCGCTCATGGCGTCACCCGCTTGAACTCGACGACCCAGACCCATGGGTTTGCGGCCCA 3857 ||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| Sbjct 14313 GGTCGGTCATGGCGTCACCCGCTTGAACTCGACCACCCAGACCCACGGGTTGGCGTCCCA 14254 Query 3858 G 3858 | Sbjct 14253 G 14253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208162567356016