Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq116532 87.8 2e-12 >seq116532 Length=35955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 21451 ATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACT 21510 |||||| |||| | ||| | ||| ||||||||||| || | |||||||| ||| Sbjct 9742 ATACAAAAATTACCTGTACAGAAGACAAGCAAAATCACAGTGGAGTCCTTCATCTCTAGA 9683 Query 21511 TATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATAT 21570 || | ||||| || ||||| || || ||||||||||| |||||||| | ||| ||||| Sbjct 9682 AATAAGCTCATTTGAGAATGTCAAGCCTGGCATTAATCCCCTCTTTTTAAGCCAGAATAT 9623 Query 21571 TGACGCAAATGCT 21583 || | |||| ||| Sbjct 9622 TG-CACAAAAGCT 9611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531019998870240