Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq128333 82.4 9e-11 >seq128333 Length=65618 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| |||| ||| |||||| | ||| |||| ||| || Sbjct 22602 TCCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACTCGTACCATAGGAACAATGCC 22661 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 |||||| | ||||| || || ||||| || || | |||||||| || || ||| Sbjct 22662 ATTTGATGTTCCATTTGTCCCACGAATATAACTCCCCGTAGCACGAATGTTGTGAACTGA 22721 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| ||| | || || ||| || || || || || Sbjct 22722 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCGTATAT 22781 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 22782 GCCTTCAATGCTATCATCTTTCATG 22806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621915630584160