Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq65908 102 9e-17 >seq65908 Length=5621 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| || |||| || || ||| || || ||||||| || || || ||||| || Sbjct 3493 CAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAACCGGCGTGCGGCTGGACGTTGGC 3434 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 | | | | | ||||||||||| ||||| || || ||||| | ||| | | | ||| | Sbjct 3433 GTAGTCGGCGCCGAACAGTTCTTTTGCACGGTCGATGGCCAGTTGCTCAACCACGTCGAC 3374 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 | | ||||| ||||| || || |||||||| || || || || ||||||||||| | Sbjct 3373 GTACTCGCAACCACCGTAGTAGCGCTTGCCTGGGTAACCTTCGGCGTACTTGTTGGTCAG 3314 Query 7165 AATAGAACCTTGCGCTTTCATAAC 7188 || |||||||| || | ||| || Sbjct 3313 AACCGAACCTTGAGCCTCCATCAC 3290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552437274106080