Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq109654 105 6e-18 seq86116 86.0 6e-12 >seq109654 Length=28343 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || ||||| ||||||| ||||| | |||||| | Sbjct 18876 ATGCAGATCTTCGTTAAGACTTTGACCGGAAAGACGATCACGCTCGAAGTCGAATCATCC 18817 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 18816 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 18757 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| ||| | || |||||| ||| Sbjct 18756 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGAACCCTCGCCGACTACAAC 18697 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||| || || || || | |||||||| || || || Sbjct 18696 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTAAGGCT 18659 >seq86116 Length=13258 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || |||||| | |||||| | || | ||| | Sbjct 3845 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 3786 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 3785 GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCAG 3726 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | | ||||| || || ||||||| | | | | | || || ||| Sbjct 3725 CAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCCTTGCTGATTACAAC 3666 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || ||| | ||| |||| || Sbjct 3665 ATTCAGAAAGAGTCCACTCTTCATTTGGTGCT 3634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477869758998720