Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq26752 109 1e-18 seq115328 87.8 5e-12 seq109206 87.8 5e-12 >seq26752 Length=1779 Score = 109 bits (120), Expect = 1e-18 Identities = 264/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||||||| | || ||||| || || | || ||||| Sbjct 389 CCACAGCACATGATCATGCGTGTTGCTGTCGGCATCCACGGCGACGACATCGAGGCCGCA 330 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAATGT 363571 || || || || || || | | || | | ||| ||||| || ||| | || || | | Sbjct 329 ATCGAGACCTACAA-CTAC-ATGTCCAACAAGTACTTCACACATGCCTCCCCTACGCTCT 272 Query 363572 ACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACG 363631 || || || || | | | ||||| || | |||||||| || | | |||||||| | Sbjct 271 TCAGCGCAGGTACCCCTCAGGCACAGCTGGCGTCTTGCTTCCTCATCGACATGAAGGATG 212 Query 363632 ATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAG 363691 | ||| |||||||||| || || || |||| || || | || |||||||| || | Sbjct 211 ACAGCATTGAGGGTATCTACGATACTCTCAAGATCTGCGCCATGATCTCCAAGAACGCTG 152 Query 363692 GCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACA 363750 | || |||||| | | ||| ||||||| || | | ||||||| | ||||| Sbjct 151 GTGGTATTGGTCTCAACACTCACCGCATTCGTGCCACTGG-CGCTTACATTGGTGGCACC 93 Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || || || || || || |||||||||||||| | |||| || || | ||| Sbjct 92 AATGGCACTTCCAACGGTCTCGTGCCCATGCTTCGTGTCTACAACAACACCGCTCGCTAC 33 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 ||||||||||| || |||||| ||| || Sbjct 32 GTCGACCAGGGAGGCAACAAGCGCCCAGGTGC 1 >seq115328 Length=60439 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | | ||| | | ||||| || |||||||||||||||||||| || Sbjct 55329 CAGTTCTATGTAGCCAATGGGGAGTTATCATGTCAGATGTATCAGCGATCTGCTGACATG 55270 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || ||||| ||||| ||| ||||| || || ||| | | |||||| Sbjct 55269 GGCCTGGGTGTGCCATTTAACATTGCGTCTTATGCACTTCTGACATGCATGGTTGCTCAT 55210 Query 111822 TTT 111824 || Sbjct 55209 GTT 55207 >seq109206 Length=27697 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || |||||||| || | || || || || || || || || ||||| || ||| Sbjct 8172 TCTTTCGCGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGC 8113 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 || || || || ||||||||||| ||||| | | ||||||||||| ||||| || || Sbjct 8112 TTCTGCGCGATATTTTGGCTAAAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAAC 8053 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||||| || |||||||| || | || |||||| |||||| |||| || Sbjct 8052 GAGTTGATATCGCGAGATGAAGGGTTACACTGCGATTTCGCGTGTTTGCTTTA 8000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301141354396232