Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq109654 109 5e-19 seq86116 93.3 4e-14 seq113932 82.4 7e-11 seq106905 82.4 7e-11 seq97232 82.4 7e-11 seq86460 82.4 7e-11 >seq109654 Length=28343 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| |||| || |||||||||| | | Sbjct 18876 ATGCAGATCTTCGTTAAGACTTTGACCGGAAAGACGATCACGCTCGAAGTCGAATCATCC 18817 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 18816 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 18757 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| || ||||||| | ||| | || ||| || ||| Sbjct 18756 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGAACCCTCGCCGACTACAAC 18697 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||||| || || || || ||||| | ||| |||| Sbjct 18696 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTAAG 18662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 19335 AATATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACCATCACTCTCGAGGTCGAGAGC 19276 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || || |||||| ||||| || || || ||||| || Sbjct 19275 TCCGACACCATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGGATCCCTCCGGAC 19216 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| || || | || || ||||| |||||||||| ||||| | | |||||| Sbjct 19215 CAGCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCCGATTAC 19156 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || || ||||| | ||| Sbjct 19155 AATATCCAGAAGGAGTCGACTCTTCATCTGGTG 19123 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | || || | || |||||| || | Sbjct 18648 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACTCTTGAGGTCGAGTCCTCC 18589 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 18588 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 18529 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||| || || || | | | | || ||||| ||| Sbjct 18528 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGACGTACCCTCGCTGATTACAAC 18469 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || ||| | || || ||| Sbjct 18468 ATCCAGAAGGAGTCCACACTCCACTTGGTG 18439 >seq86116 Length=13258 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | || || ||| | || ||| | || || || | Sbjct 3389 ATGCAAATTTTTGTTAAGACACTCACCGGGAAAACCATCACCCTTGAGGTGGAAAGCTCA 3330 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| |||||| ||||| || || || || || || || Sbjct 3329 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 3270 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || ||||||||||| |||| | | | | | |||||||||| Sbjct 3269 CAGAGGTTGATCTTCGCTGGTAAGCAACTCGAGGATGGCCGGACCCTTGCCGATTATAAC 3210 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| |||||||| || |||| || || Sbjct 3209 ATTCAGAAAGAATCCACCCTTCACTTGGT 3181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || |||||| | || ||| | || || || | | Sbjct 3845 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 3786 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 3785 GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCAG 3726 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | |||||||| || ||||||| | | | | ||||| ||| Sbjct 3725 CAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCCTTGCTGATTACAAC 3666 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| ||||| || || ||||||| ||| Sbjct 3665 ATTCAGAAAGAGTCCACTCTTCATTTGGTG 3636 >seq113932 Length=32622 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || ||| | || ||| | || || ||| | | Sbjct 27414 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 27473 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 27474 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 27533 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| ||||| ||||| || | | ||| | | ||| ||||| || Sbjct 27534 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCT-AGCGGATTACAA 27592 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || || | || || ||| | | | || |||||| Sbjct 27593 CATCCAGAAGGAGTCGACTCTCCACTTGGTGCTCCGTCTCAGGGGAGGA 27641 >seq106905 Length=25706 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || ||| | || ||| | || || ||| | | Sbjct 9324 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 9383 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 9384 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 9443 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| ||||| ||||| || | | ||| | | ||| ||||| || Sbjct 9444 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCT-AGCGGATTACAA 9502 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || || | || || ||| | | | || |||||| Sbjct 9503 CATCCAGAAGGAGTCGACTCTCCACTTGGTGCTCCGTCTCAGGGGAGGA 9551 >seq97232 Length=18783 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || ||| | || ||| | || || ||| | | Sbjct 12514 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 12455 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 12454 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 12395 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| ||||| ||||| || | | ||| | | ||| ||||| || Sbjct 12394 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCT-AGCGGATTACAA 12336 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || || | || || ||| | | | || |||||| Sbjct 12335 CATCCAGAAGGAGTCGACTCTCCACTTGGTGCTCCGTCTCAGGGGAGGA 12287 >seq86460 Length=13305 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || ||| | || ||| | || || ||| | | Sbjct 11860 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 11919 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 11920 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 11979 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| ||||| ||||| || | | ||| | | ||| ||||| || Sbjct 11980 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCT-AGCGGATTACAA 12038 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || || | || || ||| | | | || |||||| Sbjct 12039 CATCCAGAAGGAGTCGACTCTCCACTTGGTGCTCCGTCTCAGGGGAGGA 12087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429241846293780