Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq12118 168 2e-37 seq124121 132 1e-26 >seq12118 Length=1159 Score = 168 bits (186), Expect = 2e-37 Identities = 426/635 (67%), Gaps = 22/635 (3%) Strand=Plus/Minus Query 39311 GTGTACGGATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGG 39370 ||| |||| ||||| || || |||| ||||| || || | | ||| || ||| | Sbjct 1154 GTGAACGGGTCGCGAAGGACCCGAATGCCGATCCGATCCACCACCAGGTAGGTCGCTTCC 1095 Query 39371 AAGTCGCCGAAGAGAATCGGCGTCGA-GTTC---GCCGCCACATCCGGCATGTCCGGCAC 39426 | ||| ||| |||| || ||| ||| ||||| || ||||||||| |||| Sbjct 1094 ATGTCCCCGTAGAGTGCCG----CGATGTTGCCGGCCGCGACCGTCGGCATGTCGGGCAT 1039 Query 39427 CTCGGTAACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACGGTTGCCA 39486 || | ||| ||| ||||||| ||||||||| | || || ||||| Sbjct 1038 TTCCACGATCGGGGCGCCGTTCAGCGTCTGCGGCTGCCCAAGGGCATAGCTGGGCTGCCA 979 Query 39487 GAGATAGTTCCCTTGGCCGTCCTTCAGCTTCCGCACCTGACGCTGCGTGTTGCGGTTCAT 39546 || |||| || || || ||||||||||| ||| || | ||| | |||||| || Sbjct 978 CAGGAAGTTGCCCTGACCATCCTTCAGCTTGCGCGCCGAGCCGAGCGACTGGCGGTTGAT 919 Query 39547 CGCGAAGCGG-GCGTTGCCCGTGAACGCGCTCGGCAGGTCGTAGACCAGATCGATGATGC 39605 | ||| |||||||| | |||| |||| || |||||||| | ||| ||||||| || Sbjct 918 -GAACAGCTTCGCGTTGCCGGCGAACTCGCTGGGAAGGTCGTACATCAGGTCGATGAAGC 860 Query 39606 CGTCCGACGTGATGTCTGCCGCCGCACCGCTGTTCACGACTT---CGATGGCGCCGAACG 39662 | || ||||| | ||||||| || || | || |||| |||| || || | | Sbjct 859 CATCGCCCGTGAAGGCTGCCGCGGCGCCC--GATC-CGACCGTCGCGATCGCACCATAGG 803 Query 39663 GGTGCTTCGCGGCATTGGCACCGCCCGCGATGTACGTAAGCAGCCCGTTCGGCTTGTTCG 39722 | || || |||||||| |||| |||| ||| || || | || | |||||||| | Sbjct 802 GATGGCGGGCTGCATTGGCGGCGCCGGCGACGTAGGTGAGGATGCCATAGGGCTTGTTGG 743 Query 39723 TGCCGTCGCCAGCGAGGAACGCTTTGCCTTCCTGCTTGGCGAACTCGGTCTGCACTTCGG 39782 |||||| || | ||| || | | || |||||| ||||||||||| | ||||||| Sbjct 742 CGCCGTCACCGGAGAGAAAGCCGATACCCTCCTGCCGAGCGAACTCGGTGTCCACTTCGC 683 Query 39783 TCGCGAGCCACGACTCGAGATCGATTTCCGCGTCGTCGAGGATCTGCTGCGTAGCAGCCG 39842 | | |||||| ||| || |||| | |||||||| || | |||||| | ||||| Sbjct 682 TTCCCAGCCACTGCTCCAGGTCGACCGCAGCGTCGTCCAGCAGCTGCTGGCTGATAGCCG 623 Query 39843 GGTTCGCATAGATTTCGCCCGATGCGAAGCTCAGCGGCTGGAACGTAGCCGCGT--TGGT 39900 |||| || |||| ||||||| | |||| ||| || | || |||| |||| Sbjct 622 GGTTGGCGTAGAGCTCGCCCGGCGTGAAGTCGAGCACGCCGATC--TGCGGCGTCGTGGT 565 Query 39901 CTGCGGAC-GCTGGCTTGCTTCGCCGACCCAGCCG 39934 | ||| | ||| || | |||||||||||||||| Sbjct 564 CGCCGGGCGGCTAGC-GGTTTCGCCGACCCAGCCG 531 >seq124121 Length=49848 Score = 132 bits (146), Expect = 1e-26 Identities = 203/280 (73%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 40983 GAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTGTGCTCGCGC 41042 || |||||||| || || ||||||| ||| || | |||||| | || ||| ||| Sbjct 20731 GATGCTGCCGATGCGGCCAGCCCCAGCACCTTGATGACGACCTTGCCGGAGTACTCCCGC 20672 Query 41043 AGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTGACGTTCACC 41102 |||||||||||||| || | |||||| || | ||||||||| ||||| |||| ||||||| Sbjct 20671 AGCAGGTTGTAGATAGCCAGGCCTTCGAACATGTCGCCGCCCGGCGAGTTGATGTTCACC 20612 Query 41103 GTGACTTC-GCGCGCGCCGATGTTGCGAAGCGCCGCGCTGATCCGCTTCGCGGTGACGCC 41161 || || || |||| || |||| |||| | ||| ||| || || |||||||||||||| Sbjct 20611 GTAACGTCAGCGC-CGTCGATAGTGCGTAACGCGGCGGCAATGCGTTTCGCGGTGACGCC 20553 Query 41162 GGTGCCCTCCCAG---TTGTCGCCGATGGAGTCGTAGATCGAAATCGCCGCCGCATCGTC 41218 ||| |||| | | |||||| | |||| |||| || || || | || || || Sbjct 20552 CTCGCCTGTCCAGGGATCGAAGCCGATAGGGTCGAAGATGGAGAT-GCTG-TGC-TCATC 20496 Query 41219 GGCGTTCGCCGCCCGCACATCG--GGATTCCAACGCTCCA 41256 || ||||| || |||| || ||||||||||||| Sbjct 20495 TCTATTTGCCGCTCG--GATCGATGGGTTCCAACGCTCCA 20458 Score = 102 bits (112), Expect = 2e-17 Identities = 355/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 27507 GTACACCGGATCTGACGGCATGTCCGCCGATGCGACGAC-AGCTCCCGGCC--CCCAGTA 27563 ||| ||||| ||| ||||||||| || | || || || | || | ||| |||| || Sbjct 34008 GTAGACCGGGTCTTGCGGCATGTCGGC-GTTG--ACCACCATCTGGCTGCCGTCCCAATA 33952 Query 27564 GGCGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCGCCGA 27623 ||| |||||| |||| | |||||||| | | || || |||| || || | Sbjct 33951 GGCCATGCCGTGGAAGATCGAGGCGATGTCTTCAAGGACGATGTACGCCTCTTCCTGGGT 33892 Query 27624 CTGGATCACGCAGTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACACCAT 27683 || | | |||||||| ||| ||||||||| ||||| || ||||||| ||||| Sbjct 33891 TTGCAGGTAGAGGTTGCAGGTGAAGCGCGGCTCGGTACCGCCCTTGCCGTCCGGGACCAT 33832 Query 27684 CACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCATCGAC 27743 ||||| | | ||||| |||||| | | || || ||||| || | || Sbjct 33831 TTGGTCGCACCACTGGGCGATGCGGTACAGGGCGTAGCGGTTGACCATCGCCGCGTTGAG 33772 Query 27744 GGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGGGATT 27803 || ||||| ||||| || || | ||||||||| ||| ||| || || || Sbjct 33771 CCGCTCGCCGAGGCCGTAATAGGGGTGCAGCGCCAGGTCGTACCAGACCCAGGCAGGGTT 33712 Query 27804 GTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAG-TACGTGCGCGTCTCAG 27862 ||| | | || | || || ||||||||||| | ||||| || || | || || | Sbjct 33711 GTTGCTGTAGGCGAGCTTAAAAGTGCCGTCCCAGAT-CCCGACATAGGTATGGGTTTCGG 33653 Query 27863 GATCGTAGTTCGACGGCACACGCACGATCAGACCTCGAACGTGGTACGAGCGCACCGGGA 27922 |||||||||| ||||| |||| ||| | || || | | |||| | || | Sbjct 33652 GATCGTAGTTGCTGGGCACGCGCAGGATGCGGCCGCGCATCAGCGCCGAGAGTTTGGGCA 33593 Query 27923 CCTGCGAGAA-CGAGCGCGCGTCGAACGTCATACCCACGAGCGCAGTCATCGGATAGCGC 27981 | | ||| | || |||||||| ||||| | | || || | || ||| | Sbjct 33592 CGTTGTTGAATTGCTCG-GCGTCGAATTCGATACCACCCACGGCGGTGAGGGGGTAGGTC 33534 Query 27982 AGCTTGCGGTCGATGATTTCGGTGATCGCCTCGATGTTCACCGTGTCGGCGATCAGCGAG 28041 || | | |||||||||||||||||||| ||||| | || | ||||||||||||| | Sbjct 33533 AGTTCGGCGTCGATGATTTCGGTGATCGACTCGACGCGCATCATGTCGGCGATCAGGCTG 33474 Query 28042 CTGT 28045 |||| Sbjct 33473 CTGT 33470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143191982244016