Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq115941 89.7 4e-13 seq86116 89.7 4e-13 >seq115941 Length=36387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| ||||||||||| || | || |||| | Sbjct 5348 ATGCAAATCTTTGTCAAAACCCTCACTGGAAAAACCATAACTTTGGAGGTGGAGAGCTCG 5289 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| || ||| || || || ||| ||||| || || Sbjct 5288 GACACCATT-GACAATGTGAAAGCCAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCA 5230 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | || || || || | || |||| | ||| | || ||||| || Sbjct 5229 GCAGCGGCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGGAGAACTCTCGCTGATTACAA 5170 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || |||||||| Sbjct 5169 CATTCAGAAGGAGTCTAC 5152 >seq86116 Length=13258 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA-ACG-GAGTCCA 115343 |||||||||||||| || || || || || ||||||||||| | ||| || ||| | Sbjct 3161 ATGCAAATTTTTGTGAAGACCCTTACCGGGAAAACCATTACTTTGGAAGTCGAAAGTTC- 3103 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || || ||||| || ||| || || || || || || |||| ||| Sbjct 3102 -CGATACAATT-GACAATGTGAAAGCTAAGATCCAGGACAAGGAGGGTATCCCGCCTGAC 3045 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| || |||| ||| ||||| || | || |||| |||| ||||||| ||| Sbjct 3044 CAGCAAAGGCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGACGAACCTTGGCCGACTAT 2985 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| || || ||||| || | || |||||||| Sbjct 2984 AACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 2949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424657260313120