Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq26725 206 7e-49 seq24404 100 7e-17 >seq26725 Length=1775 Score = 206 bits (228), Expect = 7e-49 Identities = 530/796 (67%), Gaps = 16/796 (2%) Strand=Plus/Minus Query 1252 TTCGACGAAGCATCCAACATTG-CCGATCTGGTGTGGGAGGTAGCAGAGGGTGCGCTGAC 1310 ||||||||||||| || | || |||| | | ||||| || || ||||||| ||||| Sbjct 1155 TTCGACGAAGCAT-CAGCGGTGCCCGACAAGATTTGGGAAGTGGCCGAGGGTGGCCTGAC 1097 Query 1311 GGACGAAGACACTGAGATTATCTGGGTGGCATTCGGAAACCCTACACGTAACACCGGGCG 1370 |||| ||| ||||| | | ||||| ||||| || || | |||||| || Sbjct 1096 TGACG------GCGAGCCGTTCTGGTTCGTCTTCGGCAACCCCACCCGGACCACCGGCCG 1043 Query 1371 TTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCGCAGATTGACAGCCG 1430 ||||| || || | ||||| | || |||||||| || ||||| |||||||| Sbjct 1042 CTTCCGTGAGTGCTGGCGCAAGTTCCGCCATCGCTGGAAGACCCGTCAGATCGACAGCCG 983 Query 1431 GACGGTGGAAGGCACTAACAAACAGCAGTTGCAGAAATGGGTTGATGACTACGGGGAAGG 1490 || | || ||||| | | | | || | |||| || |||||||| |||| Sbjct 982 CCAGGCCAAGATGACGAACAAGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGAAGA 923 Query 1491 CAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCCGGATGCATCTGAATTGCAGTT 1550 ||||||| | || | || ||||| ||| | |||||| ||| ||||| ||||||| Sbjct 922 GTCCGACTTCTTCAAGGTTCGCGTGCGTGGCCTGTTCCCGTCTGCGTCTGACCTGCAGTT 863 Query 1551 TATCCCTACCGGCCTTACTGACGAGGCAATGAAACGGGTGGTAACCGCTGCGCAGGTTGC 1610 ||| || || || ||||||| | ||| | || ||| |||| || ||| Sbjct 862 CATCGGTAGCGATCTGACTGACGCCGGCATGGATCGCACGGTGACCGAGGCCATGGTCAG 803 Query 1611 ACATGCTCCGGTGATAATCGGCGTTGACCCGGCATACTCCGGCGTTGATGACGCTGTGAT 1670 ||||| || | || |||||||| || || | | ||||| | ||||| | ||| Sbjct 802 CCATGCGCCAATCATCATCGGCGTGGATCCATCCTGGTCCGGTGAGGATGAGTTCGCGAT 743 Query 1671 ATACCTGCGGCAGGGGCTGCACAGTAAGGTGCTGTGGACTGGCAACAAGACCACTGACGA 1730 |||||||| ||||| |||||||| ||| || | | || | |||| | ||||| Sbjct 742 CTACCTGCGCCAGGGCCTGCACAGCAAGCTGATCGGCACCTATCAGAAGAGCGACGACGA 683 Query 1731 TCTGATTATGGCGAAGCGTATCGCTGACTTTGAAGACCAGTACCAGGCTGACGCAGTGTT 1790 || | ||||| || ||| | | | || ||||||||| |||||||||| ||||| Sbjct 682 CGTGCTCATGGCCGGTCGGATCTCGCAGCTGGAGGACCAGTACAAGGCTGACGCTGTGTT 623 Query 1791 CATCGACTTCGGTTACGGAACTGGTCTGAAGTCAATCGG-TGACGGCTGGGGTCGTACA- 1848 | ||||||| || ||||| || || | || ||| || | ||||| ||| Sbjct 622 CGTCGACTTTGGCTACGGCACCGGCATCGTATCGGCCGGCCGAGCGATGGGG--AGACAG 565 Query 1849 TGGCAACTTGTTCCGTTCGGTGGCGCGTCTACTGACCCGCAGATGCTCAACAAGCGTGGG 1908 ||| || || | ||||||||| || || || || ||| ||||| |||||||| || Sbjct 564 TGGACGCTGGTCCAGTTCGGTGGTGCTTCAACCGATCCGGCCATGCTGAACAAGCGCGGC 505 Query 1909 GAGATGTTCAAC-TCATGCAAGACATGGCT-GAGGCTGGGCGGGATGCTGGATGACCAGG 1966 ||||| | ||| |||| ||| |||||| ||||| ||||| |||| | |||| | Sbjct 504 GAGATCTGGAACGCCATG-AAGGAATGGCTCAAGGCT-GGCGGTGAGCTGAACGACCGGC 447 Query 1967 AAACAGCGGACGACCTGTCGACGGCAGAGTACAAAGTTCGAGTGGACGGTAAAATCGTTA 2026 | || || || || | | | | |||||||| || || ||||||| || ||||| Sbjct 446 AGACCGCTGATGAGATCTGCGCCCCTGAGTACAAGGTCCGCCTGGACGGCAAGATCGTGC 387 Query 2027 TCGAACCGAAGGAAGA 2042 | ||| | ||||| || Sbjct 386 TGGAAGCCAAGGATGA 371 >seq24404 Length=1558 Score = 100 bits (110), Expect = 7e-17 Identities = 170/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 9234 GCCAAATACCCAAATCGGAAATGCCGCCTGATCCCGTTCCAATTCTCGACGGTTCAGACT 9293 ||||| ||||| | || || ||||| |||||||||||| | ||| || | ||||| Sbjct 1255 GCCAAGTACCCGGACCGCAAGTGCCGGCTGATCCCGTTCGAGTTCAGCACCGAGCAGACC 1314 Query 9294 TATGCTCTGGAGTTCGGACACCAGTACATGCGCGTTATCAAAGATGGTGCGTTGGTGCTG 9353 || | ||||||||||| ||||||||||| ||| | |||| |||| | | ||||| Sbjct 1315 TACGTCCTGGAGTTCGGTCACCAGTACATCCGCTTCATCACCAATGGCGGCTACCTGCTG 1374 Query 9354 AACAGCAGCAATGTTATTTATGAAATTGCCACGCCATATACTGAAGCCGATCTGTTCCGA 9413 |||| | || | || | || || ||||||| || |||||||| |||||| Sbjct 1375 AACATCGGCCA---GATCTTCGAGATCTCCACGCCCTACGTGGAAGCCGACCTGTTCAAC 1431 Query 9414 ATTAAATTCACGCAAAGCGCCGACGTGCTTACGCTGGTTCACCCGGCATACCCGCCGAAA 9473 | || | ||| || ||| |||||||| || | | |||||| | ||| | ||| | Sbjct 1432 CTGAACTACACCCAGTCCGCTGACGTGCTGACCATCGCTCACCCTGGCTACGCACCGCGA 1491 Query 9474 GAGCTG 9479 || ||| Sbjct 1492 GAACTG 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124814538318192