Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq109654 104 2e-17 seq115941 98.7 8e-16 seq86116 95.1 1e-14 >seq109654 Length=28343 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || || |||||||| || |||||||||||||| Sbjct 18194 CCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 18253 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||||| || || | || || ||||| ||||| || Sbjct 18254 AGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 18313 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| |||| ||| || | | | | |||||| | ||| Sbjct 18314 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCGACC 18373 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || ||||| ||||| |||||||| Sbjct 18374 TCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || ||||||||||| || |||||||| ||||| Sbjct 18878 CCACCACGGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 18937 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||| | || || || ||| | || | || ||| || ||| ||| Sbjct 18938 AGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGA 18997 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| || | ||| || | | | | || ||| || ||| Sbjct 18998 ATGCCTTCCTTGTCCTGTATCTTAGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACC 19057 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| |||||||||| || ||||| || |||||||| Sbjct 19058 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 19104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| ||| || ||||||||||| || |||||||||||||| Sbjct 18650 CCACCACGGAGCCTTAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 18709 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | || || || ||| | || | || ||| ||||| || Sbjct 18710 AGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 18769 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | |||||| | || Sbjct 18770 ATTCCTTCCTTGTCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGATGATTCGA 18827 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| || |||||||||| || || || || |||||||| Sbjct 18828 CTTCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTAACGAAGATCTGCAT 18876 >seq115941 Length=36387 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || ||||| || |||||||| || || | || || | ||||||||||| Sbjct 4690 TGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTGCCATCCTCCAATTGC 4749 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| | || |||||||||| || | ||||| ||||| ||||| | Sbjct 4750 TTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATTTTC 4809 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | || || | ||| || | ||||||||||||||| || Sbjct 4810 GCCTTTACATTGTCAATTGTATCAGAGCTCTCGACCTCGAGGGTGATGGTTTTTCCCGTA 4869 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || || |||||||| |||||| Sbjct 4870 AGGGTCTTCACAAAAATTTGCATT 4893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||||||||||||||| ||||| | || | ||||| Sbjct 4909 AGCACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGGCAAGTGTCCTTCCGTCC 4968 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| | ||||| | ||| ||||| || | ||||| || || Sbjct 4969 TCGAGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCT 5028 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | ||| ||| | ||| |||| || || | Sbjct 5029 TGGATCTTTGC--CTTGACATTGTCAATAGTATCGGAGCTCTCAACCTCCAATGTTATTG 5086 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || || |||||||||||||| Sbjct 5087 TTTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 5120 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| || || | ||| | | ||| Sbjct 5137 AGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCGAGAGTTCTCCCATCC 5196 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | ||||||||||| ||||| || | |||||| ||||| Sbjct 5197 TCAAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 5256 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | ||||| | |||| |||| || |||| Sbjct 5257 TGAATCTTGGCT--TTCACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAAGTTATGG 5314 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || ||||||||||| || ||||| Sbjct 5315 TTTTTCCAGTGAGGGTTTTGACAAAGATTTGCAT 5348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||| ||||| |||| || | | || ||||| ||| Sbjct 4462 TGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTTCCATCTTCCAACTGT 4521 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || |||| | || ||| |||||| || | |||||||||||| ||||| Sbjct 4522 TTCCCAGCGAAAATTAACCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCTTGAATTTTT 4581 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | || || | |||| |||| |||||||| ||||| ||| Sbjct 4582 GCCTTGACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTC 4641 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| |||||||| Sbjct 4642 AAGGTCTTAACAAAGATCTGCAT 4664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||||||||| ||||||||||| || Sbjct 5350 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGCG 5409 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| || || || | || | || ||| ||||| || Sbjct 5410 AGTGTCCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 5469 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885 | |||||| || || || || ||| ||||| | | | | |||| ||| |||| | Sbjct 5470 ATGCCCTCCTTATCTTGAATCTTAGCT--TTCACGTTGTCGATGGTGT--CCGAGCTCTC 5525 Query 16886 G-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||| |||||||| |||||||| || |||||||| || || ||||| Sbjct 5526 GACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 5576 >seq86116 Length=13258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | ||||| || |||||||| || || |||||||| ||| Sbjct 2479 CCACCTCGGAGACGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCCGCC 2538 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || || || || ||||||||| ||| ||||| ||| Sbjct 2539 AGGGTCCTCCCATCCTCCAGCTGCTTACCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 2598 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | |||||| | | | ||||| | ||| Sbjct 2599 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATTGTGTCTGAGCTCTCAACC 2658 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || || |||| || ||||||||||| ||||| Sbjct 2659 TCCAAGGTAATAGTCTTCCCAGTCAAGGTCTTGACAAAAATTTGCAT 2705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404433964663240