Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq98467 277 9e-70 seq43102 158 6e-34 >seq98467 Length=19475 Score = 277 bits (306), Expect = 9e-70 Identities = 522/762 (69%), Gaps = 13/762 (2%) Strand=Plus/Plus Query 65399 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65458 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 65459 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCG 65518 || | || ||||||||||| || |||||||| || || | || | || | || || Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCC--TGAC-CCTGTCG 12211 Query 65519 GTG---GCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 65575 ||| ||| | |||||||| || | || | || | | ||||||| |||||| || Sbjct 12212 GTGATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCC 12271 Query 65576 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65633 |||||||||||||||||| ||| | || || || | ||| |||| |||| | Sbjct 12272 CTGGACCCTGAGTACGCC--GGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCC 12329 Query 65634 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 65693 |||||||||| || ||||| |||||||| ||| ||| | || || || || Sbjct 12330 AGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCA 12389 Query 65694 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 65753 | | | |||| || ||||| ||||| ||||||||||| || || ||||||||| Sbjct 12390 TCGACGTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCG 12449 Query 65754 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 65813 | || || |||| ||||| |||||||| || || || ||||| ||||| |||| || Sbjct 12450 AAATGGGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAA 12509 Query 65814 TCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGA 65873 |||| || | |||| | | ||||| ||| | ||| |||||||| | || || Sbjct 12510 TCACCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGA 12569 Query 65874 AGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGT 65933 |||||||| || | | ||||| || |||||||| || || || || ||| || Sbjct 12570 AGATCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGT 12626 Query 65934 TCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGG 65993 ||||||| || ||||| |||| |||| || | || | | | ||| ||||| || |||| Sbjct 12627 TCTACGCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGG 12686 Query 65994 CTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCA 66053 ||| || | ||||| || || ||||| |||||||| |||||||||| |||| Sbjct 12687 TTGTAGGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCC 12746 Query 66054 ACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACC 66113 | ||||||||| | | ||||| ||||||||| | | | ||| | |||||| Sbjct 12747 AGGCCGAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACC 12806 Query 66114 TGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66155 ||| ||| ||| || | || |||| || || || |||| Sbjct 12807 TGGGTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGT 12848 >seq43102 Length=2767 Score = 158 bits (174), Expect = 6e-34 Identities = 219/305 (72%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 65856 TCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGG 65915 |||||||| | || |||||||||| ||| |||||| |||||||||||||| Sbjct 854 TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCAGCCCCGAGACCACCACGG 798 Query 65916 GCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCG 65975 ||||||| || ||| |||||||||||| || ||| | || | || |||||| | ||| Sbjct 797 GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGCCGCATCTCGACCC 738 Query 65976 AGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGC 66035 |||||| |||| ||||| ||||||||| ||| || ||||| || ||||||||| Sbjct 737 TGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGG 678 Query 66036 TGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG 66095 | || |||||| | | | ||||||| | || ||| ||| |||||| | ||| Sbjct 677 TCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCGA--- 621 Query 66096 AGGTCG---AACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCT 66152 |||||| | || ||||||| | |||| | ||| | || ||||||| ||||||| Sbjct 620 AGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCT 561 Query 66153 GGTTC 66157 ||||| Sbjct 560 GGTTC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237836180309584