Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq109654 132 4e-26 seq86116 96.9 3e-15 >seq109654 Length=28343 Score = 132 bits (146), Expect = 4e-26 Identities = 164/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || | ||||| ||||||| || || || Sbjct 18876 ATGCAGATCTTCGTTAAGACTTTGACCGGAAAGACGATCACGCTCGAAGTCGAATCATCC 18817 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || | || ||||| ||||| ||||| || || Sbjct 18816 GACACCATCGACAACGTCA---AAGCCAAGATCCAG-GACAAGGAAGGAATTCCCCCAGA 18761 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || |||||||| || || | ||||||| || || | | ||| || Sbjct 18760 CCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGAACCCTCGCCGACTA 18701 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| ||||| || || ||||| || ||| | ||||||||||| Sbjct 18700 CAACATTCAGAAGGAGTCCACCCTTCATCTGGTGCTAAGGCT 18659 Score = 102 bits (112), Expect = 7e-17 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | |||||||| ||||||| |||| || ||| || Sbjct 19332 ATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACCATCACTCTCGAGGTCGAGAGCTCC 19273 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | || || | ||| ||||| || ||||| || || ||| Sbjct 19272 GACACCATCGA--CAATGTTAAGGCCAAGATTCAA-GACAAGGAGGGGATCCCTCCGGAC 19216 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||| || || || || || | ||||||| | || ||| ||||||| Sbjct 19215 CAGCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCCGATTAC 19156 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || || || ||| | ||||| ||||| Sbjct 19155 AATATCCAGAAGGAGTCGACTCTTCATCTGGTGCTCAGGCT 19115 >seq86116 Length=13258 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| ||| ||||||| | || ||||| || Sbjct 3389 ATGCAAATTTTTGTTAAGACACTCACCGGGAAAACCATCACCCTTGAGGTGGAAAGCTCA 3330 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| ||||| || || ||||| || ||| Sbjct 3329 GATACCATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGTATTCCCCCAGAC 3273 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || || || || ||| | || |||| || || | | |||||| Sbjct 3272 CAGCAGAGGTTGATCTTCGCTGGTAAGCAACTCGAGGATGGCCGGACCCTTGCCGATTAT 3213 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||||||||| || || || || || Sbjct 3212 AACATTCAGAAAGAATCCACCCTTCACTTGGTTCT 3178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| ||||||| | || || || || Sbjct 3617 ATGCAAATCTTTGTCAAAACCCTTACTGGAAAAACCATCACCTTGGAGGTCGAAAGCTCC 3558 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| ||||| || ||||| || Sbjct 3557 GACACAATTGACAACGTCA---AGGCCAAGATTCAA-GACAAGGAAGGTATCCCACCAGA 3502 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | ||||| || ||||| || | || || | || ||| | | |||||| Sbjct 3501 CCAGCAGAGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACTCTTGCCGATTA 3442 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||||||||| || || || || || Sbjct 3441 CAACATCCAGAAAGAATCCACCCTTCACTTGGTACT 3406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432628369735940