Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq108749 149 1e-30 seq35281 105 1e-17 seq132097 87.8 4e-12 seq132076 87.8 4e-12 seq131845 87.8 4e-12 seq131769 87.8 4e-12 seq131578 87.8 4e-12 seq130700 87.8 4e-12 seq128121 87.8 4e-12 seq127819 87.8 4e-12 seq120906 87.8 4e-12 seq120620 87.8 4e-12 seq101391 87.8 4e-12 seq96070 87.8 4e-12 seq89014 87.8 4e-12 seq79948 87.8 4e-12 seq79909 87.8 4e-12 seq60206 87.8 4e-12 seq28096 87.8 4e-12 seq12075 87.8 4e-12 seq131963 86.0 1e-11 seq130505 86.0 1e-11 seq29077 86.0 1e-11 >seq108749 Length=27216 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| |||||||| ||||| || | |||||||||||| | |||||| ||||| Sbjct 1243 TGGTTGATGGCCTAAAGCCTGGTCAAAGGAAGATCCTCTTTTGTTCTTTCAAGAGGAACT 1302 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | || ||||| ||||| ||||||||||||||||||||||| ||| ||| | ||| | Sbjct 1303 TTGTAAAAGAAGCAAAGGTTGCTCAGTTTTCTGGTTATGTATCTGAACATTCAGCCTATC 1362 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || |||||| |||||| ||| |||| | || ||||||||||| |||||||| | Sbjct 1363 ACCATGGTGAGGCGAGTCTTGCCGGTACCATCATTGGAATGGCACAGGATTATGTGGGTA 1422 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||| ||||| || | | | || || ||||||||||| Sbjct 1423 GTAATAACATCAATCTTTTACAGCCAAATGGTCAGTTTGG 1462 >seq35281 Length=2463 Score = 105 bits (116), Expect = 1e-17 Identities = 167/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||| |||| | | |||||||| | || Sbjct 1148 GTTGGCTCCCTGTCTGGTGGTTGGAAGATGAAGTTGGCTTTGGCCCGCGCCATGTTGATG 1089 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| |||||| | || || || || || |||||||| | || ||||| | Sbjct 1088 CGTGCTGATGTCTTCCTCCTCGACGAACCTACCAACCATCTCGATGTTGCCAACATCAAG 1029 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | |||||| | | || | || | | || ||||| |||||||||||| Sbjct 1028 TGGCTCCAGGACTACCTCAAGACTCACACCGATATCACCTCTCTCATCGTCTCTCACGAC 969 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 || |||||||| || | || ||| | | ||| | ||||| ||||| || |||||| Sbjct 968 TCCGGCTTCCTCGACGAAGTCTGCACAGACATTCTGCACTACGAGCAGAA---GAAGCT 913 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| || ||||| ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 670 TCATCGGTCCCAACGGTGCTGGTAAGTCGACTCTCATCAAGGTCCTGACTGGTGAGGTTG 611 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 || ||||| || |||||| |||||| |||| || | |||| || |||| Sbjct 610 TTCCCCAGGAGGGTAAGGTCGAGAAGCACCCCAACTTGCGTATTGGTTACATCAAGCAGC 551 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 ||||| | | ||| | || | ||| |||| | ||| || ||||| ||| | ||||||| Sbjct 550 ACGCTCTTGAGCACGTTGAAATGCACTTGGAGAAGACCCCCAACCAGTACCTCCAGTGGC 491 Query 280354 GCTATGC 280360 | || || Sbjct 490 GTTACGC 484 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGC-GGTCTTTCTGGAGGCCAGAA 280738 ||||| ||||||||| || | | ||| || || | ||||||||||| || ||||| Sbjct 146 GGTCTCGACCCCGAGATTGCCAACCACAA-CGAGATCTCTGGTCTTTCTGGTGGACAGAA 88 Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 |||||| | ||| | | | || ||||| | |||||||| || | || |||||||| Sbjct 87 GGTCAAGGTCGTCCTTGCTGGTGCCATGTGGAACAACCCTCACTTGCTTGTGCTCGACGA 28 Query 280799 GCCTACCAACTATCTGGACCGCGAG 280823 ||||||||||| ||||||| ||| Sbjct 27 GCCTACCAACTTCTTGGACCGTGAG 3 >seq132097 Length=197377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 115344 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 115403 Query 142563 CCCCAC 142568 |||||| Sbjct 115404 CCCCAC 115409 >seq132076 Length=114131 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 44764 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 44705 Query 142563 CCCCAC 142568 |||||| Sbjct 44704 CCCCAC 44699 >seq131845 Length=110211 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 27153 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 27212 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 27213 AGCCCCAC 27220 >seq131769 Length=100860 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 56100 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56159 Query 142563 CCCCAC 142568 |||||| Sbjct 56160 CCCCAC 56165 >seq131578 Length=96664 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 90303 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 90244 Query 142563 CCCCAC 142568 |||||| Sbjct 90243 CCCCAC 90238 >seq130700 Length=82521 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 15275 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15216 Query 142563 CCCCAC 142568 |||||| Sbjct 15215 CCCCAC 15210 >seq128121 Length=66706 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 42191 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42132 Query 142563 CCCCAC 142568 |||||| Sbjct 42131 CCCCAC 42126 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 42893 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42834 Query 142563 CCCCAC 142568 |||||| Sbjct 42833 CCCCAC 42828 >seq127819 Length=62675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 22366 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22307 Query 142563 CCCCAC 142568 |||||| Sbjct 22306 CCCCAC 22301 >seq120906 Length=42800 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17065 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17006 Query 142563 CCCCAC 142568 |||||| Sbjct 17005 CCCCAC 17000 >seq120620 Length=83226 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 79011 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 78952 Query 142563 CCCCAC 142568 |||||| Sbjct 78951 CCCCAC 78946 >seq101391 Length=21510 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4027 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3968 Query 142563 CCCCAC 142568 |||||| Sbjct 3967 CCCCAC 3962 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4704 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4645 Query 142563 CCCCAC 142568 |||||| Sbjct 4644 CCCCAC 4639 >seq96070 Length=18071 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10368 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10309 Query 142563 CCCCAC 142568 |||||| Sbjct 10308 CCCCAC 10303 >seq89014 Length=14301 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14179 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14120 Query 142563 CCCCAC 142568 |||||| Sbjct 14119 CCCCAC 14114 >seq79948 Length=10674 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10204 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10145 Query 142563 CCCCAC 142568 |||||| Sbjct 10144 CCCCAC 10139 >seq79909 Length=10732 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 9866 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9925 Query 142563 CCCCAC 142568 |||||| Sbjct 9926 CCCCAC 9931 >seq60206 Length=4484 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2483 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2542 Query 142563 CCCCAC 142568 |||||| Sbjct 2543 CCCCAC 2548 >seq28096 Length=2000 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1048 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 989 Query 142563 CCCCAC 142568 |||||| Sbjct 988 CCCCAC 983 >seq12075 Length=1158 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 103 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 162 Query 142563 CCCCAC 142568 |||||| Sbjct 163 CCCCAC 168 >seq131963 Length=112426 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 90268 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 90209 Query 142564 CCCAC 142568 ||||| Sbjct 90208 CCCAC 90204 >seq130505 Length=82232 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 56626 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56685 Query 142564 CCCAC 142568 ||||| Sbjct 56686 CCCAC 56690 >seq29077 Length=2117 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1974 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2033 Query 142564 CCCAC 142568 ||||| Sbjct 2034 CCCAC 2038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026092202492316